| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 109 [0] | [0] 111 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 105 (0.990) | 55/96 | 0.0 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
Only 100 of 109 total aligned reads displayed.
ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756110‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > NC_000913/2791251‑2791299 ACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC < 1:7673815/50‑1ACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC < 1:8187002/50‑1 CGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC > 1:4532813/1‑50 CGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC > 1:3766041/1‑50 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT > 1:3300946/1‑50 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT < 1:1972840/50‑1 AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT > 1:7509598/1‑50 AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT > 1:3914495/1‑50 AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT > 1:1771266/1‑50 AAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT > 1:13481/1‑49 AGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG > 1:307002/1‑49 GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGA > 1:7211128/1‑49 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAA < 1:5277958/50‑1 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAA < 1:6912046/50‑1 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAA < 1:2406689/50‑1 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAA < 1:3140751/50‑1 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAA < 1:84415/50‑1 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA > 1:1690987/1‑49 TCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:3140742/1‑50 TCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:8152866/1‑50 TATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA < 1:3192371/48‑1 TATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:4339094/1‑48 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT > 1:2211177/1‑50 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA < 1:5010582/49‑1 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA < 1:5335081/49‑1 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA < 1:5343022/49‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:5582566/1‑50 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG < 1:2865280/50‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:2396989/1‑50 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG < 1:6426691/50‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT < 1:375294/49‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT < 1:3887051/49‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT < 1:1310582/49‑1 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGT < 1:4365937/49‑1 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGT < 1:2110919/49‑1 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGT < 1:1082360/49‑1 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:3556278/1‑48 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAG > 1:2070939/1‑50 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA < 1:6692833/49‑1 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA < 1:6343109/49‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC < 1:293265/50‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:1838251/1‑50 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC < 1:6048401/50‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC < 1:1637129/50‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAG < 1:2392658/49‑1 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCG < 1:7993729/50‑1 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCG < 1:1404043/50‑1 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:7227043/1‑49 TTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGA > 1:6663194/1‑50 ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATG < 1:4695769/47‑1 ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATG < 1:5209448/47‑1 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA < 1:302175/49‑1 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA < 1:6663360/49‑1 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA < 1:1012346/49‑1 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGA > 1:633387/2‑49 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGA > 1:7150179/2‑49 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 1:4723322/50‑1 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 1:5187247/50‑1 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 1:7827055/50‑1 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 1:2764499/50‑1 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC > 1:5208415/1‑50 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC > 1:961163/1‑50 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC > 1:1697284/1‑50 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT < 1:3840545/50‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT < 1:3108779/50‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT < 1:5425331/50‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT > 1:4465369/1‑49 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT < 1:3438774/49‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT > 1:8219401/1‑49 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA < 1:4450764/50‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT > 1:1055146/1‑49 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT > 1:2534050/1‑49 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:7255127/50‑1 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA > 1:4906258/1‑50 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:4783935/50‑1 CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACG < 1:445440/50‑1 AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:7263904/1‑50 AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA < 1:3816399/50‑1 GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGAC < 1:2021848/50‑1 GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA < 1:6297206/50‑1 GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA < 1:7827063/50‑1 GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA < 1:2171635/50‑1 GACTCCCCTCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTA < 1:7332109/50‑1 GACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTA < 1:6929572/50‑1 GACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGT > 1:3466724/1‑49 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA < 1:5797136/50‑1 TCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT > 1:4478511/1‑50 TCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT > 1:8309639/1‑50 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA < 1:1706219/50‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA > 1:6589719/1‑50 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTT < 1:3085938/49‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTT < 1:3482274/49‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTT < 1:6072677/49‑1 CCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT < 1:2079826/50‑1 CCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT < 1:860593/50‑1 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT < 1:2681699/50‑1 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT > 1:4687371/1‑50 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC < 1:8088117/50‑1 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > 1:7013639/1‑50 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC < 1:5361309/50‑1 ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756110‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > NC_000913/2791251‑2791299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |