| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 84 [0] | [0] 83 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 508872 | 0 (0.000) | 82 (0.750) | 56/98 | 0.0 | 100% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 0 (0.000) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
TGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTA > NC_000913/508823‑508921 | tGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGt < 1:6609972/50‑1 (MQ=255)tGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGt > 1:2837546/1‑50 (MQ=255) gCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTg > 1:2816539‑M1/1‑49 (MQ=255) gCGTCGATGCCAAATCCGCCACCCTAAAGCAGCGCATCCGCAATGATGTg > 1:3698905‑M1/1‑49 (MQ=255) cGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTgg < 1:3652582‑M1/50‑3 (MQ=255) cGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTg < 1:4111759‑M1/49‑2 (MQ=255) gTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTgga < 1:1183081‑M1/50‑4 (MQ=255) gTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTgga < 1:4105569‑M1/50‑4 (MQ=255) gATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaac < 1:874812‑M1/49‑6 (MQ=255) gATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaac < 1:7471780‑M1/49‑6 (MQ=255) gATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaac < 1:6202903‑M1/49‑6 (MQ=255) aTGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgc < 1:4310183‑M1/50‑8 (MQ=255) aTGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgc > 1:8031088‑M1/1‑43 (MQ=255) aTGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgc > 1:5206945‑M1/1‑43 (MQ=255) tGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcg < 1:6439495‑M1/50‑9 (MQ=255) ccAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgca < 1:5486020‑M1/50‑11 (MQ=255) cAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaa < 1:5130128‑M1/50‑12 (MQ=255) cAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaa > 1:2392394‑M1/1‑39 (MQ=255) cAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaa > 1:7080392‑M1/1‑39 (MQ=255) cAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaa > 1:1785873‑M1/1‑39 (MQ=255) cAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaa > 1:7223651‑M1/1‑39 (MQ=255) aaaTGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaat > 1:3972550‑M1/1‑38 (MQ=255) aaaTGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaat < 1:3669049‑M1/50‑13 (MQ=255) aaaTGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaat < 1:26911‑M1/50‑13 (MQ=255) aaTGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatg < 1:2843694‑M1/50‑14 (MQ=255) aaTGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatg < 1:7512587‑M1/50‑14 (MQ=255) aTGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatga < 1:2911255‑M1/50‑15 (MQ=255) tGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgac > 1:1404634‑M1/1‑35 (MQ=255) cgcCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacg < 1:3586273‑M1/49‑17 (MQ=255) cgcCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacg < 1:3933972‑M1/49‑17 (MQ=255) gcCTCCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgat < 1:6502981‑M1/50‑19 (MQ=255) gcCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgat < 1:2094444‑M1/50‑19 (MQ=255) gcCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgat < 1:1673453‑M1/50‑19 (MQ=255) gcCACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgat > 1:1336184‑M1/1‑32 (MQ=255) ccACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgat > 1:4134669‑M1/1‑31 (MQ=255) ccACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgat > 1:6601121‑M1/1‑31 (MQ=255) cACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatca > 1:3485733‑M1/1‑30 (MQ=255) cACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatca < 1:6711025‑M1/50‑21 (MQ=255) cACCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatca > 1:4341502‑M1/1‑30 (MQ=255) aCCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcat > 1:575998‑M1/1‑29 (MQ=255) aCCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcat < 1:7107467‑M1/50‑22 (MQ=255) aCCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcat > 1:7245582‑M1/1‑29 (MQ=255) aCCCTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcat < 1:8251317‑M1/50‑22 (MQ=255) ccTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatcc < 1:2171917‑M1/50‑24 (MQ=255) ccTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatc > 1:1019315‑M1/1‑27 (MQ=255) cTAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatcca < 1:7446095‑M1/50‑25 (MQ=255) tAAAGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatccat > 1:6557183‑M1/1‑25 (MQ=255) aaaGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatc > 1:6562196‑M1/1‑24 (MQ=255) aaGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcc < 1:6324233‑M1/50‑28 (MQ=255) aaGCAGCGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatc < 1:307447‑M1/49‑27 (MQ=255) agcagcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcct > 1:5173724‑M1/1‑22 (MQ=255) agcagcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcct < 1:3483457‑M1/50‑29 (MQ=255) agcagcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcct > 1:7706903‑M1/1‑22 (MQ=255) gcagcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctc > 1:4039084‑M1/1‑21 (MQ=255) cagcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctct < 1:835770‑M1/50‑31 (MQ=255) cagcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctct > 1:3415299‑M1/1‑20 (MQ=255) cagcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctct < 1:798102‑M1/50‑31 (MQ=255) agcGCATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctg > 1:1697195‑M1/1‑19 (MQ=255) gcgcATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgc > 1:7182632‑M1/1‑18 (MQ=255) gcATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgctt < 1:7756854‑M1/50‑35 (MQ=255) cATCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttg > 1:425742‑M1/1‑15 (MQ=255) aTCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgc > 1:7453226‑M1/1‑14 (MQ=255) aTCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgc < 1:4297383‑M1/50‑37 (MQ=255) aTCCGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgc > 1:3028781‑M1/1‑14 (MQ=255) cGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgccag < 1:1225416‑M1/50‑40 (MQ=255) cGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgccag < 1:4792598‑M1/50‑40 (MQ=255) cGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgccag < 1:4666548‑M1/50‑40 (MQ=255) cGCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgccag > 1:1456326‑M1/1‑11 (MQ=255) gCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgccagt < 1:2204316‑M1/50‑41 (MQ=255) gCAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgccagt < 1:1442345‑M1/50‑41 (MQ=255) cAATGATGTggaacgcgcaatgacgatcatccatcctctgcttgccagta < 1:6760340‑M1/50‑42 (MQ=255) aaTGATGTggaacgcgcaatgacgatcatccatcctctgcttgccagtag > 1:226945‑M1/1‑8 (MQ=255) tgatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagta < 1:5817754‑M1/50‑45 (MQ=255) tgatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagta < 1:7487484‑M1/50‑45 (MQ=255) tgatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagta < 1:4806203‑M1/50‑45 (MQ=255) gatgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagtag > 1:2853940‑M1/1‑5 (MQ=255) atgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagtagc < 1:2016872‑M1/50‑47 (MQ=255) atgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagtag < 1:2889540‑M1/49‑46 (MQ=255) atgTggaacgcgcaatgacgatcatccatcctctgcttgccagtagtag < 1:6179477‑M1/49‑46 (MQ=255) tgtggaacgcgcaatgacgatcatccatcctctgcttgccagtagtagcg > 1:7949391‑M1/1‑3 (MQ=255) tgtggaacgcgcaatgacgatcatccatcctctgcttgccagtagtagcg < 1:5497602‑M1/50‑48 (MQ=255) gtggaacgcgcaatgacgatcatccatcctctgcttgccagtagtagcg > 1:2444341‑M1/1‑2 (MQ=255) tggaacgcgcaatgacgatcatccatcctctgcttgccagtagtagcgca < 1:1669694‑M1/50‑50 (MQ=255) tggaacgcgcaatgacgatcatccatcctctgcttgccagtagtagcgca > 1:3248527‑M1/1‑1 (MQ=255) | TGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTA > NC_000913/508823‑508921 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |