| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 129 [0] | [0] 124 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 121 (1.140) | 67/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
Only 100 of 129 total aligned reads displayed.
ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCC > NC_000913/1040452‑1040549 | aTTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:7832410‑M1/1‑50 (MQ=255)aTTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:5156660‑M1/1‑50 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTc < 1:4319037‑M1/50‑2 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTc < 1:1912229‑M1/50‑2 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:7582480‑M1/49‑1 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:4309328‑M1/1‑49 (MQ=255) ttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:7804118‑M1/1‑48 (MQ=255) ttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:4652654‑M1/1‑48 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcag > 1:7706550‑M1/1‑47 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcag > 1:7991904‑M1/1‑47 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTca < 1:4309429‑M1/49‑3 (MQ=255) aCTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagt > 1:6495114‑M1/1‑46 (MQ=255) aCTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagt > 1:3956317‑M1/1‑46 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt > 1:5689036‑M1/1‑45 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt < 1:8258645‑M1/50‑6 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagt < 1:3297902‑M1/49‑5 (MQ=255) tttGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttc > 1:2391517‑M1/1‑44 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcga > 1:4056286‑M1/1‑42 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcga > 1:7785907‑M1/1‑42 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttc < 1:8110087‑M1/48‑7 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac > 1:6747553‑M1/1‑39 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac > 1:6144683‑M1/1‑39 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac < 1:5266645‑M1/50‑12 (MQ=255) cgtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacct > 1:6731821‑M1/1‑37 (MQ=255) gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctg < 1:4587260‑M1/50‑15 (MQ=255) gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctg > 1:2000915‑M1/1‑36 (MQ=255) gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctg < 1:2412451‑M1/50‑15 (MQ=255) tcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgg < 1:1650547‑M1/50‑16 (MQ=255) cgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg > 1:3004839‑M1/1‑34 (MQ=255) cgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg > 1:6140303‑M1/1‑34 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 1:7968134‑M1/1‑33 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg < 1:8286552‑M1/50‑18 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 1:1375511‑M1/1‑33 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 1:2120283‑M1/1‑33 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg < 1:7346235‑M1/49‑17 (MQ=255) gCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggt < 1:7520080‑M1/50‑19 (MQ=255) cATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggta > 1:636976‑M1/1‑31 (MQ=255) cATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggta > 1:3341952‑M1/1‑31 (MQ=255) cATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggta > 1:4309131‑M1/1‑31 (MQ=255) cATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggta > 1:2462411‑M1/1‑31 (MQ=255) cATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggta > 1:5957420‑M1/1‑31 (MQ=255) aTTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtat > 1:4755604‑M1/1‑30 (MQ=255) ttttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtatt < 1:6489620‑M1/50‑22 (MQ=255) ttttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtatt < 1:1258924‑M1/50‑22 (MQ=255) tttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc > 1:7943508‑M1/1‑28 (MQ=255) ttgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc > 1:7432292‑M1/1‑27 (MQ=255) ttgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc < 1:3121820‑M1/49‑23 (MQ=255) ttgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc < 1:7794353‑M1/49‑23 (MQ=255) ttgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc < 1:5513675‑M1/49‑23 (MQ=255) ttgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc > 1:1455829‑M1/1‑27 (MQ=255) tgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcga > 1:234421‑M1/1‑26 (MQ=255) tgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcga > 1:5237452‑M1/1‑26 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacg < 1:5861903‑M1/50‑27 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgac < 1:7385302‑M1/49‑26 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgac < 1:5168300‑M1/49‑26 (MQ=255) gATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac > 1:5747721‑M1/1‑22 (MQ=255) gATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac > 1:1048194‑M1/1‑22 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac < 1:1621058‑M1/49‑29 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac < 1:1321281‑M1/49‑29 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac > 1:467047‑M1/1‑21 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac > 1:3614433‑M1/1‑21 (MQ=255) tgtgTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacga > 1:4949093‑M1/1‑20 (MQ=255) tgtgTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacga < 1:5485849‑M1/50‑31 (MQ=255) tgtgTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacga > 1:4612714‑M1/1‑20 (MQ=255) gtgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac > 1:3307493‑M1/1‑19 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg < 1:2420042‑M1/50‑33 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:6936937‑M1/1‑18 (MQ=255) gtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:63872‑M1/1‑17 (MQ=255) ttCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgta < 1:2168848‑M1/50‑35 (MQ=255) ttCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgt < 1:2358664‑M1/49‑34 (MQ=255) ttCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgt < 1:7093101‑M1/49‑34 (MQ=255) ttCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:4410996‑M1/1‑16 (MQ=255) tCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:3520902‑M1/1‑15 (MQ=255) tCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:2611922‑M1/1‑15 (MQ=255) cGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtaga > 1:2210717‑M1/1‑14 (MQ=255) cGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtaga > 1:2709196‑M1/1‑14 (MQ=255) cGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtag < 1:5072913‑M1/49‑36 (MQ=255) cGCTCTCCACCCTTcagttcgatacctggggtatgcgacgacgacgtag < 1:5731971‑M1/49‑36 (MQ=255) tctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg > 1:7813864‑M1/1‑11 (MQ=255) ctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgt > 1:3284457‑M1/1‑10 (MQ=255) ctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgt > 1:969804‑M1/1‑10 (MQ=255) tcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgtt > 1:7026997‑M1/1‑9 (MQ=255) tcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgtt > 1:2542477‑M1/1‑9 (MQ=255) tcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgtt > 1:2898862‑M1/1‑9 (MQ=255) ccACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttc > 1:6872574‑M1/1‑8 (MQ=255) ccACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttc > 1:6145024‑M1/1‑8 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttcc < 1:2371431‑M1/50‑44 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttc < 1:6635514‑M1/49‑43 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttc > 1:4729263‑M1/1‑7 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgt < 1:7574431‑M1/47‑41 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgt < 1:7583605‑M1/47‑41 (MQ=255) aCCCTTcagttcgatacctggggtattcgacgacgacgtagactgttcca < 1:275091‑M1/50‑45 (MQ=255) aCCCTTcagttcgatacctggggtattcgacgacgacgtagactgttcca > 1:3974965‑M1/1‑6 (MQ=255) aCCCTTcagttcgatacctggggtattcgacgacgacgtagactgttcca > 1:4835754‑M1/1‑6 (MQ=255) aCCCTTcagttcgatacctggggtattcgacgacgacgtagactgttcca > 1:1301150‑M1/1‑6 (MQ=255) cccTTcagttcgatacctggggtattcgacgacgacgtagactgttccat < 1:4952869‑M1/50‑46 (MQ=255) ccTTcagttcgatacctggggtattcgacgacgacgtagactgttccatg < 1:5894773‑M1/50‑47 (MQ=255) cTTcagttcgatacctggggtattcgacgacgacgtagactgttccatga < 1:3543739‑M1/50‑48 (MQ=255) cTTcagttcgatacctggggtattcgacgacgacgtagactgttccatg > 1:5970211‑M1/1‑3 (MQ=255) ttcagttcgatacctggggtattcgacgacgacgtagactgttccatgaa > 1:1496335‑M1/1‑2 (MQ=255) | ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCC > NC_000913/1040452‑1040549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |