| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 150 [0] | [0] 149 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 146 (1.340) | 74/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
Only 100 of 150 total aligned reads displayed.
ATGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCAT > NC_000913/2466495‑2466593 | aTGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:4312137/1‑50 (MQ=255) tGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCt < 1:5972588‑M1/50‑2 (MQ=255) tGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCt < 1:1765409‑M1/50‑2 (MQ=255) gACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:1179782/1‑48 (MQ=255) gACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:6062653/1‑48 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta > 1:4620417‑M1/1‑46 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta > 1:126949‑M1/1‑46 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta > 1:4479613‑M1/1‑46 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag < 1:7047753‑M1/50‑6 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag < 1:5864655‑M1/50‑6 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag > 1:511999‑M1/1‑45 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc < 1:4383971‑M1/50‑7 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcc < 1:4225669‑M1/50‑8 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:4067928‑M1/1‑43 (MQ=255) aaaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 1:5237853‑M1/1‑41 (MQ=255) aaaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 1:1276198‑M1/1‑41 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:6524149‑M1/1‑40 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccat < 1:5453995‑M1/49‑10 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccat < 1:485905‑M1/49‑10 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatac < 1:7514698‑M1/50‑12 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccataca < 1:1715117‑M1/50‑13 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:5787473‑M1/1‑38 (MQ=255) aGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag < 1:4819271‑M1/50‑14 (MQ=255) aGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag > 1:3884194‑M1/1‑37 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc > 1:3220619‑M1/1‑35 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc < 1:8101414‑M1/50‑16 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct > 1:5453625‑M1/1‑33 (MQ=255) aTAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca < 1:6365135‑M1/50‑19 (MQ=255) tAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 1:2798544‑M1/1‑31 (MQ=255) aaaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca > 1:7807358‑M1/1‑30 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac > 1:8189402‑M1/1‑29 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac < 1:3405807‑M1/50‑22 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac > 1:2942967‑M1/1‑29 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca < 1:6563927‑M1/49‑21 (MQ=255) aataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacact > 1:4996863‑M1/1‑28 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 1:7805161‑M1/50‑24 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:568892‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 1:7857338‑M1/50‑24 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 1:1559251‑M1/50‑24 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 1:4091813‑M1/50‑24 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcg < 1:153230‑M1/50‑25 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcg < 1:6827759‑M1/50‑25 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcg < 1:8279621‑M1/50‑25 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcg < 1:2112719‑M1/50‑25 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcg < 1:2459325‑M1/50‑25 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:8158089‑M1/1‑26 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:7288855‑M1/1‑26 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:2347359‑M1/1‑25 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat < 1:6214005‑M1/50‑27 (MQ=255) ttttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatg < 1:6825151‑M1/50‑28 (MQ=255) ttttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:1199216‑M1/1‑23 (MQ=255) ttttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:6526639‑M1/1‑23 (MQ=255) ttttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:7545598‑M1/1‑23 (MQ=255) ttttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:3494207‑M1/1‑23 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:2342911‑M1/1‑22 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:7179238‑M1/1‑22 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag > 1:7574858‑M1/1‑21 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag > 1:1764633‑M1/1‑21 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatga < 1:3035273‑M1/49‑29 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc > 1:2142546‑M1/1‑19 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 1:3582664‑M1/1‑18 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc < 1:1680367‑M1/50‑33 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 1:3480188‑M1/1‑18 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 1:3960271‑M1/1‑18 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 1:3453470‑M1/1‑18 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc < 1:6335971‑M1/49‑32 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc < 1:3981670‑M1/49‑32 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct > 1:8090553‑M1/1‑17 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct < 1:4924432‑M1/50‑34 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct > 1:732128‑M1/1‑17 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct < 1:3759787‑M1/50‑34 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct > 1:5546514‑M1/1‑17 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg < 1:2620824‑M1/50‑35 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg < 1:3582921‑M1/50‑35 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt < 1:4856377‑M1/50‑36 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:1877058‑M1/1‑13 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:4993903‑M1/1‑13 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 1:7916124‑M1/1‑12 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 1:85310‑M1/1‑12 (MQ=255) gATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagt < 1:4610693‑M1/50‑40 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt < 1:7419212‑M1/50‑41 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt > 1:5602783‑M1/1‑10 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt > 1:1899158‑M1/1‑9 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 1:5681511‑M1/1‑8 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 1:5642404‑M1/1‑8 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 1:4761360‑M1/1‑8 (MQ=255) tttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:6403471‑M1/1‑7 (MQ=255) tttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc < 1:1944533‑M1/49‑43 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:7012323‑M1/1‑6 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct < 1:188545‑M1/49‑44 (MQ=255) tACCCtagagccatacagcctcacactcgatgaggcctgtcagtttctt < 1:3531555‑M1/49‑45 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcagtttctta > 1:109929‑M1/1‑4 (MQ=255) ccctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaa < 1:3154969‑M1/50‑48 (MQ=255) ccctagagccatacagcctcacactcgatgaggcctgtcagtttcttaa > 1:344195‑M1/1‑3 (MQ=255) ccctagagccatacagcctcacactcgatgaggcctgtcagtttcttaa < 1:4927169‑M1/49‑47 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa < 1:2762512‑M1/50‑49 (MQ=255) ctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaatt > 1:65877‑M1/1‑1 (MQ=255) ctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaat < 1:1003061‑M1/50‑50 (MQ=255) ctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:7571173‑M1/1‑1 (MQ=255) ctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:5687737‑M1/1‑1 (MQ=255) | ATGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCAT > NC_000913/2466495‑2466593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |