| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 91 [0] | [0] 93 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 87 (0.820) | 48/96 | 0.1 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15339‑15435 | tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTC > 1:735853‑M1/1‑50 (MQ=255)tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:6269348‑M1/50‑1 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCta < 1:1344533‑M1/50‑3 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCta < 1:7791359‑M1/50‑3 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCta < 1:4223727‑M1/50‑3 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCt < 1:1613155‑M1/49‑2 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCt < 1:61676‑M1/49‑2 (MQ=255) ggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtac < 1:1090419‑M1/50‑4 (MQ=255) gTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCtacc > 1:5521001‑M1/1‑46 (MQ=255) gTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacc < 1:835638‑M1/50‑5 (MQ=255) gTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacc < 1:5830416‑M1/50‑5 (MQ=255) gTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacc < 1:5291854‑M1/50‑5 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGACACTCtaccc > 1:4948759‑M1/1‑45 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 1:1501506‑M1/50‑6 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 1:4774225‑M1/50‑6 (MQ=255) tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacct < 1:5719151‑M1/50‑6 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctca < 1:3793322‑M1/50‑8 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctc < 1:294463‑M1/49‑7 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctc < 1:6631952‑M1/49‑7 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctc < 1:5845890‑M1/49‑7 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctc < 1:2015476‑M1/49‑7 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCtacctcaa > 1:6463258‑M1/1‑42 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaa < 1:3587271‑M1/50‑9 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 1:7285405‑M1/50‑10 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 1:3921206‑M1/50‑10 (MQ=255) tGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCtaccccaatg > 1:7912308‑M1/1‑40 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatg < 1:4295152‑M1/49‑11 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGGACACCCtacctcaatggg > 1:7656108‑M1/1‑38 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtg < 1:4081655‑M1/50‑13 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtg < 1:1006264‑M1/50‑13 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtg < 1:2954245‑M1/50‑13 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgt < 1:7717610‑M1/49‑12 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgta < 1:2596197‑M1/50‑15 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat < 1:2502542‑M1/50‑16 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGGTCAATCtaactccatgtgttt > 1:5860607‑M1/1‑34 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGGGCACTCtaccccaaagtgtat > 1:6383625‑M1/1‑34 (MQ=255) atGCGAGCACCTGTAAAGTGGCGGGGATCACCCtacctccatgtgtatca > 1:3249048‑M1/1‑33 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcac < 1:145807‑M1/50‑19 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcaca < 1:4945273‑M1/49‑20 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcaca < 1:2925723‑M1/49‑20 (MQ=255) aGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaata < 1:4847683‑M1/50‑23 (MQ=255) gCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatat < 1:36839‑M1/50‑24 (MQ=255) gCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatat < 1:7954617‑M1/50‑24 (MQ=255) cACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatc < 1:2439665‑M1/50‑25 (MQ=255) ccTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatcca < 1:7446619‑M1/50‑27 (MQ=255) cTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccat < 1:2182331‑M1/50‑28 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatat < 1:634339‑M1/49‑30 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatat < 1:49252‑M1/49‑30 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattc < 1:7116960‑M1/49‑32 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattc < 1:6150389‑M1/49‑32 (MQ=255) aGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctt < 1:5955351‑M1/50‑34 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg > 1:7628653‑M1/1‑15 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg > 1:5171058‑M1/1‑15 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg > 1:280013‑M1/1‑15 (MQ=255) ggCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt > 1:2235257‑M1/1‑14 (MQ=255) ggCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt > 1:4387657‑M1/1‑14 (MQ=255) ggCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt > 1:2685349‑M1/1‑14 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtg > 1:5453269‑M1/1‑13 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt < 1:3738055‑M1/49‑37 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt < 1:465700‑M1/49‑37 (MQ=255) cGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtgg < 1:4819263‑M1/50‑39 (MQ=255) cGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtgg < 1:4352254‑M1/50‑39 (MQ=255) cGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtgg > 1:3562475‑M1/1‑12 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:7093593‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg < 1:6425078‑M1/50‑40 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:5716480‑M1/1‑10 (MQ=255) ggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:2488412‑M1/1‑9 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtggggga < 1:2250250‑M1/50‑43 (MQ=255) aTCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggag > 1:4118094‑M1/1‑7 (MQ=255) aTCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggag < 1:1504556‑M1/50‑44 (MQ=255) aTCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggag > 1:2664292‑M1/1‑7 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 1:7488206‑M1/1‑6 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 1:7684175‑M1/50‑47 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 1:7780891‑M1/50‑47 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:4061323‑M1/1‑4 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 1:8273976‑M1/50‑47 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:756321‑M1/1‑4 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:2276475‑M1/1‑4 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct > 1:2593751‑M1/1‑4 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 1:6635816‑M1/50‑47 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 1:1641655‑M1/50‑47 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc < 1:2619989‑M1/49‑46 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc < 1:3976120‑M1/49‑46 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc < 1:2886058‑M1/49‑46 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:3508300‑M1/1‑3 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:4705919‑M1/1‑3 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:7132822‑M1/1‑2 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:4453529‑M1/1‑2 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:4056545‑M1/1‑2 (MQ=255) ctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:6695296‑M1/1‑1 (MQ=255) ctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:8258356‑M1/1‑1 (MQ=255) | TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15339‑15435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |