BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,651,293	Δ2,422 bp		[yhiS]–yhiS	[yhiS], insH‑11, yhiS

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3651293	3653714	2422	145 [0]	[0] 143	[yhiS]–yhiS	[yhiS],insH‑11,yhiS

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3651292	0 (0.000)	137 (1.320)	67/94	0.0	100%	pseudogene (2/746 nt)	yhiS	putative uncharacterized protein YhiS
*	?	NC_000913	3653715 =	0 (0.000)	137 (1.320)	67/94	0.0	100%	intergenic (+2/‑246)	yhiS/slp	putative uncharacterized protein YhiS/starvation lipoprotein

Only 100 of 145 total aligned reads displayed.

TCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATT  >  NC_000913/3651243‑3651341

tCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAT                                                   <  1:3147475‑M1/50‑1 (MQ=255)

 ccAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATa                                                  >  1:6531409‑M1/1‑49 (MQ=255)

  cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATat                                                 >  1:4431767‑M1/1‑48 (MQ=255)

  cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATat                                                 <  1:2853378‑M1/50‑3 (MQ=255)

    aTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattg                                               <  1:7726113‑M1/50‑5 (MQ=255)

    aTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattg                                               <  1:1631831‑M1/50‑5 (MQ=255)

    aTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATatt                                                >  1:1493454‑M1/1‑46 (MQ=255)

     tttAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattga                                              <  1:5148678‑M1/50‑6 (MQ=255)

     tttAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattga                                              >  1:222284‑M1/1‑45 (MQ=255)

      ttAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat                                             >  1:4692981‑M1/1‑44 (MQ=255)

       tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat                                             <  1:1183090‑M1/49‑7 (MQ=255)

       tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat                                             <  1:647418‑M1/49‑7 (MQ=255)

       tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat                                             <  1:1147884‑M1/49‑7 (MQ=255)

        aaaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatt                                            <  1:2177051‑M1/49‑8 (MQ=255)

         aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                          >  1:7997485‑M1/1‑41 (MQ=255)

         aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                          >  1:3387194‑M1/1‑41 (MQ=255)

         aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                          <  1:8127178‑M1/50‑10 (MQ=255)

         aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatta                                           <  1:6883629‑M1/49‑9 (MQ=255)

          aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatt                                         <  1:2683691‑M1/50‑11 (MQ=255)

          aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat                                          >  1:7241962‑M1/1‑40 (MQ=255)

           cATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatta                                        <  1:7575501‑M1/50‑12 (MQ=255)

            aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag                                       >  1:4491905‑M1/1‑38 (MQ=255)

            aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag                                       <  1:5497482‑M1/50‑13 (MQ=255)

               ttAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac                                    >  1:251020‑M1/1‑35 (MQ=255)

               ttAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac                                    >  1:140201‑M1/1‑35 (MQ=255)

                tAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcact                                   >  1:6958691‑M1/1‑34 (MQ=255)

                tAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcact                                   >  1:5740593‑M1/1‑34 (MQ=255)

                tAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcact                                   >  1:5845280‑M1/1‑34 (MQ=255)

                 aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcactt                                  >  1:8096385‑M1/1‑33 (MQ=255)

                 aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac                                    <  1:4019129‑M1/48‑16 (MQ=255)

                 aGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac                                    <  1:5651852‑M1/48‑16 (MQ=255)

                  gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttt                                 <  1:6110571‑M1/50‑19 (MQ=255)

                  gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcactt                                  <  1:3255882‑M1/49‑18 (MQ=255)

                  gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcactt                                  <  1:2341640‑M1/49‑18 (MQ=255)

                   cATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta                                <  1:2142797‑M1/50‑20 (MQ=255)

                   cATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta                                >  1:7249302‑M1/1‑31 (MQ=255)

                   cATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttta                                >  1:1648609‑M1/1‑31 (MQ=255)

                    aTAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttat                               <  1:6377719‑M1/50‑21 (MQ=255)

                     tAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttata                              <  1:3920145‑M1/50‑22 (MQ=255)

                      aaaaCAAATGATGAATAAGGAATTTTATattgattattagcactttataa                             >  1:5475109‑M1/1‑28 (MQ=255)

                        aaCAAATGATGAATAAGGAATTTTATattgattattagcactttataatc                           <  1:3445498‑M1/50‑25 (MQ=255)

                         aCAAATGATGAATAAGGAATTTTATattgattattagcactttatactca                          <  1:3593744‑M1/50‑26 (MQ=255)

                         aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca                          <  1:7259080‑M1/50‑26 (MQ=255)

                         aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca                          >  1:7088126‑M1/1‑25 (MQ=255)

                         aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca                          <  1:7574977‑M1/50‑26 (MQ=255)

                         aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca                          <  1:5055133‑M1/50‑26 (MQ=255)

                         aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca                          <  1:7292285‑M1/50‑26 (MQ=255)

                          cAAATGATGAATAAGGAATTTTATattgattattagcactttataatcat                         <  1:7493893‑M1/50‑27 (MQ=255)

                          cAAATGATGAATAAGGAATTTTATattgattattagcactttataatcat                         <  1:8254074‑M1/50‑27 (MQ=255)

                           aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt                        >  1:5118204‑M1/1‑23 (MQ=255)

                           aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt                        <  1:692755‑M1/50‑28 (MQ=255)

                           aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt                        >  1:3595907‑M1/1‑23 (MQ=255)

                            aaTGATGAATAAGGAATTTTATattgattattagcactttataatcattg                       <  1:7926397‑M1/50‑29 (MQ=255)

                            aaTGATGAATAAGGAATTTTATattgattattagcactttataatcattg                       <  1:5783870‑M1/50‑29 (MQ=255)

                             atgatgAATAAGGAATTTTATattgattattagcactttataatcattga                      <  1:743268‑M1/50‑30 (MQ=255)

                              tgatgaATAAGGAATTTTATattgattattagcactttataatcattgaa                     <  1:5746940‑M1/50‑31 (MQ=255)

                              tgatgaATAAGGAATTTTATattgattattagcactttataatcattgaa                     <  1:1354250‑M1/50‑31 (MQ=255)

                              tgatgaATAAGGAATTTTATattgattattagcactttataatcattgaa                     >  1:5286522‑M1/1‑20 (MQ=255)

                               gatgaATAAGGAATTTTATattgattattagcactttataatcattgaa                     >  1:784332‑M1/1‑19 (MQ=255)

                                atgaATAAGGAATTTTATattgattattagcactttataatcattgaata                   <  1:3438897‑M1/50‑33 (MQ=255)

                                atgaATAAGGAATTTTATattgattattagcactttataatcattgaata                   <  1:323045‑M1/50‑33 (MQ=255)

                                atgaATAAGGAATTTTATattgattattagcactttataatcattgaat                    >  1:1224483‑M1/1‑18 (MQ=255)

                                atgaATAAGGAATTTTATattgattattagcactttataatcattgaat                    >  1:612662‑M1/1‑18 (MQ=255)

                                 tgaATAAGGAATTTTATattgattattagcactttataatcattgaataa                  <  1:250402‑M1/50‑34 (MQ=255)

                                 tgaATAAGGAATTTTATattgattattagcactttataatcattgaata                   >  1:6896151‑M1/1‑17 (MQ=255)

                                   aaTAAGGACTTTTATattgattattagtactttataatcattgaataaa                 >  1:7712287‑M1/1‑15 (MQ=255)

                                   aaTAAGGAATTTTATattgattattagcactttatgatcattgaataaaa                <  1:5212489‑M1/50‑36 (MQ=255)

                                   aaTAAGGAATTTTATattgattattagcactttataatcattgaataaaa                <  1:394321‑M1/50‑36 (MQ=255)

                                   aaTAAGGAATTTTATattgattattagcactttataatcattgaataaaa                <  1:5333335‑M1/50‑36 (MQ=255)

                                   aaTAAGGAATTTTATattgattattagcactttataatcattgaataaa                 <  1:7180109‑M1/49‑35 (MQ=255)

                                    aTAAGGAATTTTATattgattattagcactttataatcattgaataaaaa               <  1:4741049‑M1/50‑37 (MQ=255)

                                     tAAGGAATTTTATattgattattagcactttataatcattgaataaaaa               >  1:7678473‑M1/1‑13 (MQ=255)

                                       aGGAATTTTATattgattattagcactttataatcattgaataaaaatag            <  1:6388363‑M1/50‑40 (MQ=255)

                                       aGGAATTTTATattgattattagcactttataatcattgaataaaaatag            <  1:5444932‑M1/50‑40 (MQ=255)

                                       aGGAATTTTATattgattattagcactttataatcattgaataaaaatag            <  1:4159980‑M1/50‑40 (MQ=255)

                                       aGGAATTTTATattgattattagcactttataatcattgaataaaaa               >  1:874059‑M1/1‑11 (MQ=255)

                                        ggAATTTTATattgattattagcactttataatcattgaataaaaataga           <  1:3417572‑M1/50‑41 (MQ=255)

                                         gAATTTTATattgattattagcactttataatcattgaataaaaatagat          <  1:6888137‑M1/50‑42 (MQ=255)

                                         gAATTTTATattgattattagcactttataatcattgaataaaaatagat          <  1:643049‑M1/50‑42 (MQ=255)

                                          aaTTTTATattgattattagcactttataatcattgaataaaaatagatt         <  1:8306784‑M1/50‑43 (MQ=255)

                                          aaTTTTATattgattattagcactttataatcattgaataaaaatagatt         <  1:1947071‑M1/50‑43 (MQ=255)

                                          aaTTTTATattgattattagcactttataatcattgaataaaaatagatt         >  1:4851717‑M1/1‑8 (MQ=255)

                                          aaTTTTATattgattattagcactttataatcattgaataaaaatagatt         <  1:4809876‑M1/50‑43 (MQ=255)

                                           aTTTTATattgattattagcactttataatcattgaataaaaatagattt        >  1:628018‑M1/1‑7 (MQ=255)

                                           aTTTTATattgattattagcactttataatcattgaataaaaatagattt        >  1:4631199‑M1/1‑7 (MQ=255)

                                           aTTTTATattgattattagcactttataatcattgaataaaaatagattt        >  1:4136427‑M1/1‑7 (MQ=255)

                                             tttATattgattattagcactttataatcattgaataaaaatagatttta      >  1:2398484‑M1/1‑5 (MQ=255)

                                              ttATattgattattagcactttataatcattgaataaaaatagattttat     >  1:6693199‑M1/1‑4 (MQ=255)

                                              ttATattgattattagcactttataatcattgaataaaaatagattttat     >  1:2780486‑M1/1‑4 (MQ=255)

                                              ttATattgattattagcactttataatcattgaataaaaatagattttat     >  1:3807879‑M1/1‑4 (MQ=255)

                                              ttATattgattattagcactttataatcattgaataaaaatagatttta      <  1:3150846‑M1/49‑46 (MQ=255)

                                               tatattgattattagcactttataatcattgaataaaaatagattttatg    >  1:1946576‑M1/1‑3 (MQ=255)

                                               tatattgattattagcactttataatcattgaataaaaatagattttat     <  1:7365562‑M1/49‑47 (MQ=255)

                                               tatattgattattagcactttataatcattgaataaaaatagattttat     <  1:17735‑M1/49‑47 (MQ=255)

                                               tatattgattattagcactttataatcattgaataaaaatagattttat     <  1:7142487‑M1/49‑47 (MQ=255)

                                                atattgattattagcactttataatcattgaataaaaatagattttatg    >  1:5856457‑M1/1‑2 (MQ=255)

                                                 tattgattattagcactttataatcattgaataaaaatagattttatgta  >  1:3197664‑M1/1‑1 (MQ=255)

                                                 tattgattattagcactttataatcattgaataaaaatagattttatgta  >  1:5207589‑M1/1‑1 (MQ=255)

                                                 tattgattattagcactttataatcattgaataaaaatagattttatgta  >  1:1986016‑M1/1‑1 (MQ=255)

                                                 tattgattattagcactttataatcattgaataaaaatagattttatgta  <  1:1535141‑M1/50‑50 (MQ=255)

TCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATT  >  NC_000913/3651243‑3651341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`