| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 93 [0] | [0] 100 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 90 (0.860) +GA |
57/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 | ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 1:6146754‑M2/1‑1 (MQ=255)ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa > 1:3715581‑M2/50‑50 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:1748652‑M2/2‑1 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg < 1:7860954‑M2/3‑1 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg < 1:6259494‑M2/3‑1 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:4261862‑M2/47‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:6424380‑M2/47‑50 (MQ=255) tctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:4327093‑M2/46‑49 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGcc < 1:5212646‑M2/5‑1 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc < 1:2400131‑M2/4‑1 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc < 1:819903‑M2/4‑1 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa > 1:8285512‑M2/45‑50 (MQ=255) tcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt > 1:1422640‑M2/44‑50 (MQ=255) tcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt > 1:7248195‑M2/44‑50 (MQ=255) tcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt > 1:7462863‑M2/44‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa < 1:1621200‑M2/6‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt < 1:4643834‑M2/9‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtt < 1:2008513‑M2/8‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtt < 1:5049580‑M2/8‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt < 1:7201270‑M2/7‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt < 1:3881341‑M2/10‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 1:706922‑M2/41‑50 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 1:4903122‑M2/40‑49 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg < 1:614347‑M2/11‑1 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg > 1:6500030‑M2/39‑49 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt < 1:3384436‑M2/14‑1 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt < 1:3390219‑M2/14‑1 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt < 1:746643‑M2/15‑1 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:3761449‑M2/36‑50 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:7548124‑M2/36‑50 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:8086221‑M2/36‑50 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt < 1:1114520‑M2/15‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAttt < 1:5417416‑M2/16‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:5090758‑M2/35‑49 (MQ=255) gacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc > 1:145017‑M2/33‑50 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc < 1:6789538‑M2/18‑1 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg < 1:4403035‑M2/19‑1 (MQ=255) catcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg > 1:2691077‑M2/31‑49 (MQ=255) catcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg > 1:1419292‑M2/31‑49 (MQ=255) catcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGa < 1:1615425‑M2/20‑1 (MQ=255) atcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGaa > 1:1394293‑M2/30‑50 (MQ=255) atcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGaa < 1:5651801‑M2/21‑1 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc > 1:2780000‑M2/29‑50 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACgg < 1:7937872‑M2/24‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:1280687‑M2/27‑49 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg < 1:5849792‑M2/23‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTCGAATTTACGAACg < 1:1152712‑M2/23‑1 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCATTCTGAATTTACGAACGGa < 1:1489472‑M2/25‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:4245928‑M2/26‑1 (MQ=255) ttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg > 1:6652998‑M2/24‑50 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg < 1:5794543‑M2/27‑1 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg < 1:5693665‑M2/27‑1 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg < 1:7208311‑M2/27‑1 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg < 1:6957323‑M2/27‑1 (MQ=255) gtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCa > 1:3740955‑M2/22‑50 (MQ=255) gtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCa > 1:3354057‑M2/22‑50 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCa < 1:4855888‑M2/29‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTa < 1:5939777‑M2/32‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATc < 1:1993270‑M2/34‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATc < 1:5733857‑M2/34‑1 (MQ=255) cccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:2121753‑M2/16‑48 (MQ=255) cccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:4338674‑M2/16‑48 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg < 1:499488‑M2/36‑1 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg < 1:820851‑M2/36‑1 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg < 1:2839167‑M2/36‑1 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg > 1:3093621‑M2/15‑50 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg < 1:6642134‑M2/36‑1 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg > 1:3921101‑M2/15‑50 (MQ=255) cagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGa < 1:2072912‑M2/39‑1 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAc < 1:525487‑M2/40‑1 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAc < 1:4357540‑M2/40‑1 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAc < 1:5808163‑M2/40‑1 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:4932403‑M2/9‑50 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:2169334‑M2/9‑50 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt < 1:2190679‑M2/42‑1 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt < 1:5893849‑M2/43‑1 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt < 1:8064857‑M2/43‑1 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 1:4041588‑M2/7‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTa < 1:3064164‑M2/44‑1 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTa < 1:5364964‑M2/44‑1 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa < 1:5825551‑M2/45‑1 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:4368485‑M2/6‑50 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:7993189‑M2/6‑50 (MQ=255) tagaACGCCATTTTGATTTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:7844904‑M2/46‑1 (MQ=255) tagaACGCCATTTTGAATTTACGAGCGGACGCATTATCAGTGACTTTAAc < 1:4412053‑M2/46‑1 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:4360807‑M2/46‑1 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:3138254‑M2/46‑1 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc > 1:7860518‑M2/5‑50 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc > 1:4950482‑M2/5‑50 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:2498515‑M2/46‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg < 1:3520705‑M2/48‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 1:2378841‑M2/3‑50 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:5919234‑M2/47‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:1903811‑M2/47‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:8112547‑M2/47‑1 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGc < 1:180445‑M2/49‑1 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGc < 1:2866327‑M2/49‑1 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCAGTTACTTTAACGGCa > 1:8313244/1‑50 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCa > 1:73330/1‑50 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCa > 1:1262302/1‑50 (MQ=255) | CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |