| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 612,648 | G→T | intergenic (‑154/‑89) | fepA ← / → fes | ferric enterobactin outer membrane transporter/enterochelin esterase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 612,648 | 0 | G | T | 85.5% | 371.5 / 56.4 | 125 | intergenic (‑154/‑89) | fepA/fes | ferric enterobactin outer membrane transporter/enterochelin esterase |
| Reads supporting (aligned to +/- strand): ref base G (3/15); new base T (28/78); total (31/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.74e-01 | |||||||||||
Only 100 of 129 total aligned reads displayed.
CAGTGCAGTTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACGCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATATTTCTGC > NC_000913/612599‑612697 | cagtgcagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACg < 1:5069512/50‑1 (MQ=255) gtgcagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTActct < 1:6433099/50‑1 (MQ=255) gtgcagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTActct < 1:5901876/50‑1 (MQ=255) tgcagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTa < 1:1111827/50‑1 (MQ=255) tgcagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTa > 1:3077660/1‑50 (MQ=255) tgcagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTa < 1:2456881/50‑1 (MQ=255) cagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTAtt < 1:851748/50‑1 (MQ=255) cagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTAtt < 1:6568233/50‑1 (MQ=255) cagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTAtt < 1:212754/50‑1 (MQ=255) cagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTAt < 1:2907958/49‑1 (MQ=255) agtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtg < 1:1089118/50‑1 (MQ=255) agtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtg < 1:7808398/50‑1 (MQ=255) agtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtg > 1:7784890/1‑50 (MQ=255) agtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtg > 1:2152320/1‑50 (MQ=255) agtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACGCTATtg < 1:4102387/50‑1 (MQ=255) gtTGGTTAATTAATGTCCGCGCTTCCCACAGCGCGCCATTACTCTATtgc < 1:1965362/50‑1 (MQ=255) ttGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgca < 1:6909217/50‑1 (MQ=255) ttGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgca < 1:2840078/50‑1 (MQ=255) ggTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaa < 1:4941729/49‑1 (MQ=255) ggTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACGCTATtgcaaa > 1:5531983/1‑50 (MQ=255) ggTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACGCTATtgcaa < 1:1934136/49‑1 (MQ=255) gTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaat > 1:3768638/1‑50 (MQ=255) gTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaat < 1:4826570/50‑1 (MQ=255) gTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaat > 1:4846691/1‑50 (MQ=255) gTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaa < 1:5067467/49‑1 (MQ=255) gTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACGCTATtgcaaa < 1:1624942/49‑1 (MQ=255) ttaattaaTGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatg > 1:807695/1‑50 (MQ=255) ttaattaaTGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatg < 1:4239382/50‑1 (MQ=255) ttaattaaTGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatg < 1:4583837/50‑1 (MQ=255) ttaattaaTGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatg > 1:2444590/1‑50 (MQ=255) aattaatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgc < 1:6552663/49‑1 (MQ=255) attaatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgcaa < 1:2188974/50‑1 (MQ=255) attaatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgca > 1:4536435/1‑49 (MQ=255) ttaatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgcaaa < 1:1428782/50‑1 (MQ=255) ttaatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgcaaa > 1:7018172/1‑50 (MQ=255) aatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgcaaa > 1:5617094/1‑48 (MQ=255) atGTCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATa < 1:6393502/49‑1 (MQ=255) atGTCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATa < 1:6874665/49‑1 (MQ=255) atGTCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATa < 1:1083762/49‑1 (MQ=255) atGTCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAg > 1:6532783/1‑50 (MQ=255) atGTCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAg < 1:7771384/50‑1 (MQ=255) atGTCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAg < 1:1720080/50‑1 (MQ=255) atGTCCGCGCTTCCCACGGCGCGCCATTACACTATTGCAAATGCAAATa < 1:3634944/49‑1 (MQ=255) tGTCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGt > 1:743545/1‑50 (MQ=255) tGTCCGCGCTTCCCACGGCGCGCCATTACGCTATTGCAAATGCAAATAGt < 1:4856257/50‑1 (MQ=255) tCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGtt < 1:295227/49‑1 (MQ=255) tCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGtt < 1:171377/49‑1 (MQ=255) tCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGtt < 1:1192236/49‑1 (MQ=255) tCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTa < 1:4812778/50‑1 (MQ=255) ccGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTAt > 1:270699/1‑50 (MQ=255) cgcgCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTAt < 1:1214975/49‑1 (MQ=255) cgcgCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTAt > 1:8241446/1‑49 (MQ=255) gcgcTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCa < 1:6930072/50‑1 (MQ=255) gcgcTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCa < 1:1807076/50‑1 (MQ=255) gcgcTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCa < 1:6401591/50‑1 (MQ=255) cgcTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaa < 1:6200060/50‑1 (MQ=255) gcTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaat < 1:3606551/50‑1 (MQ=255) gcTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaat < 1:6079647/50‑1 (MQ=255) gcTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaa > 1:7057940/1‑49 (MQ=255) gcTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaa > 1:2483634/1‑49 (MQ=255) cTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaata < 1:3113880/50‑1 (MQ=255) ttCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaataa > 1:3087262/1‑50 (MQ=255) cccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaataat < 1:4785421/49‑1 (MQ=255) cccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaataat < 1:7706243/49‑1 (MQ=255) cccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaataat < 1:3784275/49‑1 (MQ=255) cccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaataat < 1:6211489/49‑1 (MQ=255) cccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAataata > 1:4545572/1‑50 (MQ=255) cccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAataata > 1:6941621/1‑50 (MQ=255) cccACGGCGCGCCATTACGCTATTGCAAATGCAAATAGTTATCaataa < 1:674005/48‑1 (MQ=255) ccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAataata < 1:6278687/49‑1 (MQ=255) ccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAatat < 1:3645107/50‑1 (MQ=255) ccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAatat > 1:1780203/1‑50 (MQ=255) ccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAatat < 1:2417527/50‑1 (MQ=255) cACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtatt < 1:6394969/50‑1 (MQ=255) cACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtatt < 1:6671376/50‑1 (MQ=255) aCGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtatta < 1:2698568/50‑1 (MQ=255) cGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtattat < 1:7001602/50‑1 (MQ=255) cGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtattat < 1:5445190/50‑1 (MQ=255) cGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtattat < 1:453539/50‑1 (MQ=255) cGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtattat < 1:7546949/50‑1 (MQ=255) cGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtattat < 1:8109344/50‑1 (MQ=255) cGGCGCGCCATTACGCTATTGCAAATGCAAATAGTTATCAATAAtattat < 1:3414978/50‑1 (MQ=255) ggCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATc < 1:3245112/50‑1 (MQ=255) cgcgcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCaa < 1:5034673/50‑1 (MQ=255) gcgcCATTACGCTATTGCAAATGCAAATAGTTATCAATAATATTATCAat < 1:1434945/50‑1 (MQ=255) gcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatat < 1:3839485/50‑1 (MQ=255) gcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatat < 1:7295955/50‑1 (MQ=255) ccATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatata < 1:4855612/50‑1 (MQ=255) ccATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatata < 1:1111632/50‑1 (MQ=255) cATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatatat < 1:7220680/50‑1 (MQ=255) cATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatatat > 1:5955331/1‑50 (MQ=255) cATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatatat < 1:8174750/50‑1 (MQ=255) cATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatatat < 1:3935156/50‑1 (MQ=255) aTTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATAtt > 1:6627053/1‑50 (MQ=255) aTTACGCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATAtt > 1:1453364/1‑50 (MQ=255) ttACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATAttt < 1:1279335/50‑1 (MQ=255) ttACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATAttt < 1:4455845/50‑1 (MQ=255) ttACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATAttt < 1:537188/50‑1 (MQ=255) cGCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATATTTCt < 1:1900935/49‑1 (MQ=255) gCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATATTTCTGc < 1:8037273/50‑1 (MQ=255) | CAGTGCAGTTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACGCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATATTTCTGC > NC_000913/612599‑612697 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |