BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,382,555	C→T	S203S (AGC→AGT)	ompG →	outer membrane porin G

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,382,555	0	C	T	100.0%	438.8 / NA	108	S203S (AGC→AGT)	ompG	outer membrane porin G
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (53/55); total (53/55)

Only 100 of 108 total aligned reads displayed.

TTGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGCCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTGC  >  NC_000913/1382508‑1382601

ttGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              >  1:2912731/1‑50 (MQ=255)

ttGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              >  1:3081118/1‑50 (MQ=255)

 tGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              >  1:1086830/1‑49 (MQ=255)

 tGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              >  1:5760425/1‑49 (MQ=255)

  gCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              <  1:7989225/48‑1 (MQ=255)

  gCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              <  1:5419640/48‑1 (MQ=255)

  gCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              <  1:1888655/48‑1 (MQ=255)

  gCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGc                                             <  1:5903491/49‑1 (MQ=255)

  gCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGc                                             <  1:6807983/49‑1 (MQ=255)

  gCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGc                                             >  1:8137896/1‑49 (MQ=255)

   cGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCaa                                           >  1:5616709/1‑50 (MQ=255)

   cGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCaa                                           >  1:686884/1‑50 (MQ=255)

    gAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCaa                                           >  1:5827291/1‑49 (MQ=255)

    gAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCaa                                           >  1:4294253/1‑49 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAAt                                          >  1:3300547/1‑49 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATa                                         <  1:7646496/50‑1 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATa                                         <  1:529278/50‑1 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATa                                         <  1:2375630/50‑1 (MQ=255)

      gTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATaa                                        <  1:5113312/50‑1 (MQ=255)

       tGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAAc                                       <  1:5685825/50‑1 (MQ=255)

       tGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAAc                                       <  1:1213967/50‑1 (MQ=255)

         aaCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACgg                                     <  1:3996306/50‑1 (MQ=255)

         aaCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACgg                                     >  1:4337460/1‑50 (MQ=255)

         aaCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACgg                                     >  1:7660400/1‑50 (MQ=255)

         aaCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACg                                      <  1:7975760/49‑1 (MQ=255)

         aaCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACg                                      <  1:1229423/49‑1 (MQ=255)

          aCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGt                                    >  1:6836682/1‑50 (MQ=255)

          aCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGt                                    <  1:3282365/50‑1 (MQ=255)

           cTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGt                                    >  1:8140622/1‑49 (MQ=255)

           cTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTg                                   <  1:7111774/50‑1 (MQ=255)

            tattatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGt                                    >  1:194782/1‑48 (MQ=255)

             attatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAg                                 >  1:1033971/1‑50 (MQ=255)

              ttatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGa                                  <  1:1435076/48‑1 (MQ=255)

              ttatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAg                                 <  1:1267232/49‑1 (MQ=255)

              ttatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGt                                <  1:6577918/50‑1 (MQ=255)

              ttatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGt                                <  1:7227961/50‑1 (MQ=255)

               tatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtt                               >  1:939810/1‑50 (MQ=255)

               tatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtt                               >  1:3818126/1‑50 (MQ=255)

               tatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtt                               >  1:347481/1‑50 (MQ=255)

               tatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtt                               >  1:1121322/1‑50 (MQ=255)

                atCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtt                               <  1:4450326/49‑1 (MQ=255)

                atCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtt                               <  1:8105392/49‑1 (MQ=255)

                 tctcGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGttt                              <  1:4503436/49‑1 (MQ=255)

                  ctcGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTc                            >  1:6202065/1‑50 (MQ=255)

                   tcGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTc                            >  1:5357774/1‑49 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTc                            <  1:3609706/47‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTc                            <  1:3298744/47‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCa                          <  1:5935852/49‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCa                          <  1:5119557/49‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCAc                         >  1:7395524/1‑50 (MQ=255)

                      aGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACg                        >  1:2698502/1‑50 (MQ=255)

                       gcgcGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACg                        >  1:1318497/1‑49 (MQ=255)

                       gcgcGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       <  1:6832565/50‑1 (MQ=255)

                       gcgcGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       <  1:3411658/50‑1 (MQ=255)

                        cgcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  1:55661/1‑49 (MQ=255)

                         gcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  1:2062657/1‑48 (MQ=255)

                          cgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAg                    <  1:3454572/50‑1 (MQ=255)

                          cgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAg                    <  1:4713920/50‑1 (MQ=255)

                           ggCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAg                    >  1:2696026/1‑49 (MQ=255)

                           ggCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGa                   <  1:5097467/50‑1 (MQ=255)

                              ttCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAt                >  1:7970988/1‑50 (MQ=255)

                              ttCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAt                >  1:1328284/1‑50 (MQ=255)

                              ttCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAt                >  1:350793/1‑50 (MQ=255)

                               tCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAtt               >  1:6092197/1‑50 (MQ=255)

                                cAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAtt               <  1:1952520/49‑1 (MQ=255)

                                cAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAtt               <  1:6974133/49‑1 (MQ=255)

                                cAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTc              >  1:2378192/1‑50 (MQ=255)

                                 aaTATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTc              <  1:4297844/49‑1 (MQ=255)

                                 aaTATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTc              <  1:5070217/49‑1 (MQ=255)

                                 aaTATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTc              <  1:4131205/49‑1 (MQ=255)

                                  atatGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcgc            <  1:103194/50‑1 (MQ=255)

                                  atatGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcgc            >  1:7756610/1‑50 (MQ=255)

                                  atatGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcgc            >  1:2172536/1‑50 (MQ=255)

                                  atatGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcgc            <  1:6752571/50‑1 (MQ=255)

                                  atatGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcgc            <  1:1041286/50‑1 (MQ=255)

                                   tatGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcgcg           <  1:114490/50‑1 (MQ=255)

                                   tatGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcgcg           >  1:6224634/1‑50 (MQ=255)

                                    atGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCgcgc          >  1:3934848/1‑50 (MQ=255)

                                    atGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCgcgc          >  1:3190089/1‑50 (MQ=255)

                                     tGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCgcgc          <  1:8066520/49‑1 (MQ=255)

                                     tGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCgcgc          <  1:7560553/49‑1 (MQ=255)

                                     tGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGcc         <  1:2603948/50‑1 (MQ=255)

                                     tGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGcc         >  1:6020060/1‑50 (MQ=255)

                                     tGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGcc         >  1:7148932/1‑50 (MQ=255)

                                      ggACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGcc         >  1:5040016/1‑49 (MQ=255)

                                       gacgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTa       >  1:3130836/1‑50 (MQ=255)

                                         cgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAtt     >  1:1450064/1‑50 (MQ=255)

                                         cgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAtt     <  1:5616844/50‑1 (MQ=255)

                                         cgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAtt     >  1:4912214/1‑50 (MQ=255)

                                          gacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAttt    >  1:534123/1‑50 (MQ=255)

                                          gacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAttt    <  1:5143394/50‑1 (MQ=255)

                                          gacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAttt    >  1:6354253/1‑50 (MQ=255)

                                          gacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAttt    <  1:4685167/50‑1 (MQ=255)

                                          gacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAttt    <  1:4137855/50‑1 (MQ=255)

                                          gacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATCCGCGCCTAttt    >  1:2536640/1‑50 (MQ=255)

                                           acAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTg   <  1:7454971/50‑1 (MQ=255)

                                           acAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTg   >  1:274350/1‑50 (MQ=255)

                                           acAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTg   >  1:5988931/1‑50 (MQ=255)

                                           acAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTg   >  1:6212927/1‑50 (MQ=255)

                                            cAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTGc  <  1:8319305/50‑1 (MQ=255)

TTGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGCCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTGC  >  NC_000913/1382508‑1382601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`