| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,761,556 | A→C | L79* (TTA→TGA) | sufD ← | Fe‑S cluster scaffold complex subunit SufD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,761,556 | 0 | A | C | 85.9% | 262.3 / 29.2 | 78 | L79* (TTA→TGA) | sufD | Fe‑S cluster scaffold complex subunit SufD |
| Reads supporting (aligned to +/- strand): ref base A (5/6); new base C (43/24); total (48/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.43e-01 | |||||||||||
GCACGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATGCTG > NC_000913/1761509‑1761603 | gCACGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCAc < 1:2904935/50‑1 (MQ=255) cACGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACg > 1:4650087/1‑50 (MQ=255) cACGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACg < 1:1647260/50‑1 (MQ=255) cACGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTAACg < 1:1508054/50‑1 (MQ=255) aCGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGc > 1:2320738/1‑50 (MQ=255) cGTAACGCCCATCGACAAACACCAGCCGCACGTAGTCTAACGTTCACGCt < 1:4264452/50‑1 (MQ=255) cGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGc > 1:3422307/1‑49 (MQ=255) cGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGGTCACGCt < 1:4514220/50‑1 (MQ=255) gTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCt > 1:3241480/1‑49 (MQ=255) tAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCt > 1:7088731/1‑48 (MQ=255) tAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCt > 1:3181119/1‑48 (MQ=255) tAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTaa < 1:5008605/50‑1 (MQ=255) aCGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAgg > 1:2903110/1‑50 (MQ=255) aCGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAgg < 1:6214800/50‑1 (MQ=255) aCGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAg < 1:3804272/49‑1 (MQ=255) cGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAgg > 1:1366318/1‑49 (MQ=255) gCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCa > 1:6912591/1‑50 (MQ=255) cccATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCAt > 1:1698185/1‑50 (MQ=255) cccATCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCAt > 1:2237672/1‑50 (MQ=255) ccATCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATc < 1:635308/50‑1 (MQ=255) cATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCa < 1:1537849/50‑1 (MQ=255) aTCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCAc > 1:4898691/1‑50 (MQ=255) aTCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCAc > 1:3720364/1‑50 (MQ=255) aTCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCAc < 1:7017179/50‑1 (MQ=255) aTCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCAc > 1:466549/1‑50 (MQ=255) aTCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCAc < 1:7477954/50‑1 (MQ=255) aTCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCAc < 1:7347616/50‑1 (MQ=255) tCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACg < 1:5146481/50‑1 (MQ=255) tCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCACg > 1:1524850/1‑50 (MQ=255) gACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgct > 1:4570353/1‑50 (MQ=255) gACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgc < 1:3504485/49‑1 (MQ=255) gACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCACgct < 1:6853985/50‑1 (MQ=255) aCAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgctg > 1:5980223/1‑50 (MQ=255) aCAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgctg < 1:195719/50‑1 (MQ=255) aCAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgctg > 1:6886394/1‑50 (MQ=255) cAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgctgc < 1:4010614/50‑1 (MQ=255) cAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgctgc > 1:8164955/1‑50 (MQ=255) aaaCACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgctgct > 1:3744908/1‑50 (MQ=255) aaaCACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgctgct > 1:5908799/1‑50 (MQ=255) aaaCACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgctgct > 1:6154949/1‑50 (MQ=255) cacCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCACGCTGCtgtg > 1:3045958/1‑50 (MQ=255) ccAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTggg < 1:5411867/50‑1 (MQ=255) cAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCACGCTGCTGTggg > 1:8298637/1‑49 (MQ=255) aGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGa > 1:388124/1‑50 (MQ=255) aGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGa > 1:2379378/1‑50 (MQ=255) gCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGat < 1:5253495/50‑1 (MQ=255) gCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGat < 1:765151/50‑1 (MQ=255) ccGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGata < 1:5411119/50‑1 (MQ=255) ccGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGata < 1:1412906/50‑1 (MQ=255) cGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGatat > 1:7299995/1‑50 (MQ=255) cGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGatat > 1:7670914/1‑50 (MQ=255) cGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGatat > 1:3518676/1‑50 (MQ=255) gCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtc > 1:2038911/1‑50 (MQ=255) gCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtc < 1:1607624/50‑1 (MQ=255) gCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtc > 1:2272040/1‑50 (MQ=255) gCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtc > 1:1582480/1‑50 (MQ=255) gCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtc > 1:1091457/1‑50 (MQ=255) cACGGAGTCTAACGTTAACGCTAAGGCATCACGCTGCTGTGGGGATAtct > 1:3980561/1‑50 (MQ=255) aCGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtctc > 1:5867793/1‑50 (MQ=255) aCGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtctc > 1:2031643/1‑50 (MQ=255) cGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtctct > 1:5191136/1‑50 (MQ=255) cGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtctct > 1:2222323/1‑50 (MQ=255) ggAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtctctc > 1:652144/1‑50 (MQ=255) gAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTcc > 1:1670656/1‑50 (MQ=255) aGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTccc > 1:670652/1‑50 (MQ=255) gTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCg > 1:7171426/1‑50 (MQ=255) gTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCg > 1:7253794/1‑50 (MQ=255) cTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGc > 1:3283332/1‑49 (MQ=255) cTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGc > 1:7646087/1‑49 (MQ=255) aaCGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAAt > 1:5324331/1‑50 (MQ=255) aCGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCaa < 1:5295959/48‑1 (MQ=255) aCGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATg < 1:1639165/50‑1 (MQ=255) cGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATGc < 1:494087/50‑1 (MQ=255) cGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATGc > 1:6275497/1‑50 (MQ=255) cGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATGc < 1:7802430/50‑1 (MQ=255) cGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATGc < 1:5172135/50‑1 (MQ=255) cGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATGc > 1:100443/1‑50 (MQ=255) ttAACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATGCTg < 1:6172329/50‑1 (MQ=255) | GCACGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATGCTG > NC_000913/1761509‑1761603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |