Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,090,282 C→T intergenic (+30/‑65) yggI → / → endA conserved protein YggI/DNA‑specific endonuclease I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,090,2820CT100.0% 472.5 / NA 114intergenic (+30/‑65)yggI/endAconserved protein YggI/DNA‑specific endonuclease I
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (63/51);  total (63/51)

Only 100 of 114 total aligned reads displayed.

CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT  >  NC_000913/3090235‑3090328
                                               |                                              
cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              >  1:3602330/1‑50 (MQ=255)
cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              <  1:5057320/50‑1 (MQ=255)
 aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg                                             <  1:35636/50‑1 (MQ=255)
 aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg                                             >  1:6354518/1‑50 (MQ=255)
  gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc                                            >  1:3014202/1‑50 (MQ=255)
  gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc                                            <  1:3144672/50‑1 (MQ=255)
  gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc                                            <  1:4252532/50‑1 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           <  1:3545229/50‑1 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           <  1:2229196/50‑1 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           >  1:1950523/1‑50 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           <  1:1512161/50‑1 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           <  1:1345573/50‑1 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTAGCAGGAACTTTCCTGATTTGGCt                                           <  1:2712202/50‑1 (MQ=38)
    tGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           >  1:7192503/1‑49 (MQ=255)
     ggTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa                                         >  1:3751430/1‑50 (MQ=255)
     ggTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa                                         >  1:748671/1‑50 (MQ=255)
     ggTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa                                         >  1:7862747/1‑50 (MQ=255)
     ggTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa                                         >  1:7966889/1‑50 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTg                                          <  1:4025661/48‑1 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTg                                          <  1:6131934/48‑1 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                        >  1:3308799/1‑50 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                        >  1:4733280/1‑50 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                        <  1:2643533/50‑1 (MQ=255)
       ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt                                       <  1:970857/50‑1 (MQ=255)
       ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt                                       >  1:1563968/1‑50 (MQ=255)
         gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      >  1:5015760/1‑49 (MQ=255)
         gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      <  1:1767835/49‑1 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc                                     <  1:2263441/49‑1 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  1:6292675/1‑50 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    <  1:6807449/50‑1 (MQ=255)
           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  1:4928463/1‑49 (MQ=255)
           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCAt                                   <  1:8315847/50‑1 (MQ=255)
           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCAt                                   <  1:3706273/50‑1 (MQ=255)
            aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa                                  <  1:5124962/50‑1 (MQ=255)
            aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa                                  >  1:8084672/1‑50 (MQ=255)
               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                                >  1:228606/1‑49 (MQ=255)
               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                               <  1:5333805/50‑1 (MQ=255)
               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                               <  1:2927526/50‑1 (MQ=255)
                aaCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                               >  1:45221/1‑49 (MQ=255)
                aaCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                               >  1:5429445/1‑49 (MQ=255)
                aaCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                               >  1:5364987/1‑49 (MQ=255)
                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:6182720/1‑50 (MQ=255)
                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:8265486/1‑50 (MQ=255)
                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            <  1:4639849/50‑1 (MQ=255)
                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            <  1:3262621/50‑1 (MQ=255)
                   cATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAAc                           <  1:203947/50‑1 (MQ=255)
                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:8256406/1‑48 (MQ=255)
                     tCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                         >  1:2824999/1‑50 (MQ=255)
                      cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                        >  1:1527483/1‑50 (MQ=255)
                      cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                        >  1:3909346/1‑50 (MQ=255)
                       tGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt                       >  1:5015373/1‑50 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                         <  1:6936128/46‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                        <  1:4997350/47‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                     >  1:8050733/1‑50 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                     <  1:7699528/50‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt                      <  1:1061286/49‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt                      <  1:19468/49‑1 (MQ=255)
                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    <  1:893129/50‑1 (MQ=255)
                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    <  1:4701290/50‑1 (MQ=255)
                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    <  1:1741255/50‑1 (MQ=255)
                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    >  1:5553602/1‑50 (MQ=255)
                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    >  1:1495643/1‑50 (MQ=255)
                            tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  1:479245/1‑50 (MQ=255)
                            tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  1:3296066/1‑50 (MQ=255)
                            tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  1:1012658/1‑50 (MQ=255)
                             aTCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  1:3552163/1‑49 (MQ=255)
                             aTCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  1:1140512/1‑49 (MQ=255)
                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  <  1:3357340/48‑1 (MQ=255)
                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa                >  1:6652318/1‑50 (MQ=255)
                               cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               >  1:8199984/1‑50 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               <  1:2154141/49‑1 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               <  1:4590088/49‑1 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg              >  1:892464/1‑50 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg              <  1:7087185/50‑1 (MQ=255)
                                 ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt             >  1:2564417/1‑50 (MQ=255)
                                 ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt             >  1:188669/1‑50 (MQ=255)
                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt            <  1:7422707/50‑1 (MQ=255)
                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt            <  1:8138213/50‑1 (MQ=255)
                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt            <  1:3777041/50‑1 (MQ=255)
                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt            >  1:6206604/1‑50 (MQ=255)
                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt            <  1:4708278/50‑1 (MQ=255)
                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           >  1:1205375/1‑50 (MQ=255)
                                    aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc          <  1:7808981/50‑1 (MQ=255)
                                    aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc          >  1:2398437/1‑50 (MQ=255)
                                    aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc          >  1:4934517/1‑50 (MQ=255)
                                      tttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg        >  1:5934565/1‑50 (MQ=255)
                                      tttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg        >  1:4628426/1‑50 (MQ=255)
                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg       <  1:3125717/49‑1 (MQ=255)
                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg       <  1:530438/49‑1 (MQ=255)
                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg        <  1:2122578/48‑1 (MQ=255)
                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc      >  1:4211217/1‑50 (MQ=255)
                                         ccTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc      <  1:2064951/49‑1 (MQ=255)
                                         ccTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc      <  1:2593733/49‑1 (MQ=255)
                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCt     <  1:1408464/49‑1 (MQ=255)
                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    >  1:5400421/1‑50 (MQ=255)
                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    >  1:3500960/1‑50 (MQ=255)
                                            gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt  >  1:6577575/1‑50 (MQ=255)
                                            gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt  >  1:5036043/1‑50 (MQ=255)
                                            gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt  >  1:4299955/1‑50 (MQ=255)
                                            gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt  >  1:3724133/1‑50 (MQ=255)
                                               |                                              
CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT  >  NC_000913/3090235‑3090328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑