BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	765,191	Δ1 bp	coding (685/723 nt)	mngR ←	DNA‑binding transcriptional repressor MngR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	765,189	0	T	.	100.0%	554.0 / NA	114	coding (687/723 nt)	mngR	DNA‑binding transcriptional repressor MngR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (72/42); total (72/42)

Only 100 of 132 total aligned reads displayed.

GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACC  >  NC_000913/765140‑765234

gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt                                               <  1:5266671/50‑1 (MQ=255)

gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt                                               >  1:7547407/1‑50 (MQ=255)

 ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtt                                              <  1:1932427/50‑1 (MQ=255)

 ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtt                                              <  1:655569/50‑1 (MQ=255)

 ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtt                                              <  1:1493183/50‑1 (MQ=255)

  cTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             <  1:4942811/50‑2 (MQ=255)

  cTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:6984607/1‑49 (MQ=255)

   ttttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:4573940/1‑48 (MQ=255)

   ttttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:1259850/1‑48 (MQ=255)

    tttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:1340544/1‑47 (MQ=255)

    tttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:1750938/1‑47 (MQ=255)

     ttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAttat                                            <  1:5169065/48‑3 (MQ=255)

       ttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                        <  1:1384023/49‑1 (MQ=38)

       ttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                        >  1:4746903/1‑49 (MQ=38)

        tgtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTc                                       <  1:1191400/49‑1 (MQ=38)

         gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCa                                      <  1:6711146/49‑1 (MQ=38)

         gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                     >  1:6565196/1‑50 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                    >  1:1954081/1‑50 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                    >  1:4008971/1‑50 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                    <  1:7838455/50‑1 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                    >  1:3789088/1‑50 (MQ=39)

             ttATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg                                  >  1:7370654/1‑49 (MQ=38)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa                                <  1:7613727/49‑1 (MQ=38)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa                                <  1:3834354/49‑1 (MQ=38)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               >  1:2018076/1‑50 (MQ=39)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               >  1:4426111/1‑50 (MQ=39)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               >  1:3643119/1‑50 (MQ=39)

                tCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAtt                              <  1:6171378/50‑1 (MQ=39)

                tCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               <  1:7292910/49‑1 (MQ=38)

                 cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:1277683‑M1/1‑50 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:2897762‑M1/1‑49 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             <  1:2052408‑M1/49‑1 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:5152450‑M1/1‑49 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:4752444‑M1/1‑49 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:7258101‑M1/1‑49 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:1294533‑M1/1‑49 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:1150823‑M1/1‑49 (MQ=255)

                   cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:8065779‑M1/1‑48 (MQ=255)

                     atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:2795501‑M1/1‑46 (MQ=255)

                     atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:6654849‑M1/1‑46 (MQ=255)

                     atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:1730617‑M1/1‑46 (MQ=255)

                     atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:1091965‑M1/1‑46 (MQ=255)

                      tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                        <  1:5636145‑M1/50‑6 (MQ=255)

                      tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                        <  1:7946373‑M1/50‑6 (MQ=255)

                      tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                         >  1:8089424‑M1/1‑45 (MQ=255)

                      tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                         >  1:5391698‑M1/1‑45 (MQ=255)

                       gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                       >  1:4935964‑M1/1‑44 (MQ=255)

                       gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                       >  1:5429216‑M1/1‑44 (MQ=255)

                       gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                       >  1:6258865‑M1/1‑44 (MQ=255)

                       gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                       >  1:2645058‑M1/1‑44 (MQ=255)

                       gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                       >  1:232827‑M1/1‑44 (MQ=255)

                        atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                      >  1:5450991‑M1/1‑43 (MQ=255)

                        atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                      <  1:288815‑M1/50‑8 (MQ=255)

                        atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                      <  1:6915294‑M1/50‑8 (MQ=255)

                        atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                      >  1:2499278‑M1/1‑43 (MQ=255)

                         ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                      >  1:8289574‑M1/1‑42 (MQ=255)

                         ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                      >  1:4703522‑M1/1‑42 (MQ=255)

                          tttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                     >  1:1970912‑M1/1‑41 (MQ=255)

                          tttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                     >  1:1765769‑M1/1‑41 (MQ=255)

                           ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca                    <  1:6164545‑M1/49‑10 (MQ=255)

                           ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca                    <  1:3944507‑M1/49‑10 (MQ=255)

                            tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                   <  1:170887‑M1/49‑11 (MQ=255)

                            tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                   <  1:2581628‑M1/49‑11 (MQ=255)

                             cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                 >  1:2111483‑M1/1‑38 (MQ=255)

                             cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                 >  1:7412862‑M1/1‑38 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                <  1:1846628‑M1/50‑14 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                >  1:1820329‑M1/1‑37 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                 <  1:7934603‑M1/49‑13 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagaatcaaacc                 >  1:6338552‑M1/1‑37 (MQ=255)

                               cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                >  1:3259134‑M1/1‑36 (MQ=255)

                                tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg               >  1:4108888‑M1/1‑35 (MQ=255)

                                tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg               >  1:5892470‑M1/1‑35 (MQ=255)

                                tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg               >  1:7190550‑M1/1‑35 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag            >  1:314575‑M1/1‑33 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag            <  1:3128946‑M1/50‑18 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           >  1:8269439‑M1/1‑32 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           >  1:7126099‑M1/1‑32 (MQ=255)

                                    cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           >  1:3394603‑M1/1‑31 (MQ=255)

                                    cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           >  1:7920254‑M1/1‑31 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:2699841‑M1/1‑30 (MQ=255)

                                      aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:8203153‑M1/1‑29 (MQ=255)

                                       tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaacccgaagccaca       <  1:2331698‑M1/50‑23 (MQ=255)

                                       tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca       >  1:112578‑M1/1‑28 (MQ=255)

                                       tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         <  1:7323735‑M1/48‑21 (MQ=255)

                                       tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         <  1:7177220‑M1/48‑21 (MQ=255)

                                       tCAGGGTAAA‑TTATAGTCATCGGTATTAaagcaatcaaaccgaagccac        <  1:5936226‑M1/49‑22 (MQ=255)

                                        cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca       >  1:1518092‑M1/1‑27 (MQ=255)

                                        cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca       >  1:3873773‑M1/1‑27 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata     <  1:1276909‑M1/50‑25 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata     <  1:1814814‑M1/50‑25 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata     >  1:5915084‑M1/1‑26 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacat      <  1:5799005‑M1/49‑24 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacat      <  1:4924029‑M1/49‑24 (MQ=255)

                                          gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat    <  1:6043146‑M1/50‑26 (MQ=255)

                                          gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat    <  1:2941555‑M1/50‑26 (MQ=255)

                                           ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg   >  1:3558130‑M1/1‑24 (MQ=255)

                                           ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg   <  1:3986854‑M1/50‑27 (MQ=255)

                                           ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg   <  1:4258264‑M1/50‑27 (MQ=255)

                                            gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  <  1:8147251‑M1/50‑28 (MQ=255)

                                            gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  <  1:7272539‑M1/50‑28 (MQ=255)

GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACC  >  NC_000913/765140‑765234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`