BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,720,597	Δ1 bp	coding (4/153 nt)	hokA ←	small toxic polypeptide

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,720,596	0	G	.	100.0%	842.1 / NA	170	coding (5/153 nt)	hokA	small toxic polypeptide
Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (88/82); total (88/82)

Only 100 of 180 total aligned reads displayed.

TAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCA  >  NC_000913/3720547‑3720641

tAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg                                               <  1:5627635/50‑1 (MQ=255)

tAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg                                               >  1:7583799/1‑50 (MQ=255)

tAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg                                               >  1:6800367/1‑50 (MQ=255)

 aaaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCg                                               >  1:1103008/1‑49 (MQ=255)

  aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgca                                             >  1:3419454/1‑48 (MQ=255)

  aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgca                                             >  1:1912324/1‑48 (MQ=255)

  aaaGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCgca                                             >  1:7805478/1‑48 (MQ=255)

      cGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc                                        >  1:7248023/1‑50 (MQ=255)

      cGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc                                        >  1:5275510/1‑50 (MQ=255)

      cGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc                                        <  1:4200934/50‑1 (MQ=255)

      cGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc                                        >  1:7728747/1‑50 (MQ=255)

      cGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc                                        <  1:4457362/50‑1 (MQ=255)

       gTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTccc                                       <  1:5858266/50‑1 (MQ=255)

       gTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc                                        >  1:2276129/1‑49 (MQ=39)

       gTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc                                        >  1:6401108/1‑49 (MQ=39)

        tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc                                        >  1:3657126/1‑48 (MQ=255)

        tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTcc                                        >  1:7710972/1‑48 (MQ=255)

        tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa                                      <  1:7942925/50‑1 (MQ=255)

        tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa                                      <  1:3586394/50‑1 (MQ=255)

        tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa                                      <  1:2864130/50‑1 (MQ=255)

        tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa                                      <  1:5805103/50‑1 (MQ=255)

        tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa                                      <  1:5192238/50‑1 (MQ=255)

        tGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCa                                      <  1:4378785/50‑1 (MQ=255)

         gAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAg                                     >  1:5948997/1‑50 (MQ=255)

          aaaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGc                                    >  1:2007804/1‑50 (MQ=255)

           aaCAAATCGCTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcc                                   <  1:249611/50‑1 (MQ=255)

           aaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcc                                   <  1:7549433/50‑1 (MQ=255)

           aaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcc                                   >  1:3532693/1‑50 (MQ=255)

           aaCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcc                                   >  1:7659346/1‑50 (MQ=255)

            aCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcct                                  <  1:2879909/50‑1 (MQ=255)

            aCAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcct                                  >  1:5338019/1‑50 (MQ=255)

             cAAATCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctc                                 >  1:4728187/1‑50 (MQ=255)

              aaaTCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctcc                                >  1:1463500/1‑50 (MQ=255)

              aaaTCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctcc                                >  1:8149210/1‑50 (MQ=255)

               aaTCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGcctcct                               <  1:6730466/50‑1 (MQ=255)

                 tCACTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCtgt                             <  1:3970324/50‑1 (MQ=255)

                   aCTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTgtgt                           >  1:4710600/1‑50 (MQ=255)

                   aCTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTgtgt                           >  1:2951862/1‑50 (MQ=255)

                    cTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt                          >  1:2687251/1‑50 (MQ=255)

                    cTATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt                          <  1:2124389/50‑1 (MQ=255)

                     tATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt                          >  1:288757/1‑49 (MQ=255)

                     tATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt                          >  1:7780288/1‑49 (MQ=255)

                     tATTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGtt                          >  1:152306/1‑49 (MQ=255)

                      aTTAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGa                        >  1:8244977/1‑50 (MQ=255)

                       ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTg                         <  1:7213039/48‑1 (MQ=255)

                       ttAAAGAAAGTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAt                       >  1:4829683/1‑50 (MQ=255)

                         aaagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAtt                      <  1:2214025/49‑1 (MQ=255)

                         aaagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAtt                      <  1:2114545/49‑1 (MQ=255)

                          aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAttt                     <  1:3525677/49‑1 (MQ=255)

                          aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAttt                     <  1:5095383/49‑1 (MQ=255)

                          aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAttt                     <  1:4805616/49‑1 (MQ=255)

                          aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAttt                     <  1:837143/49‑1 (MQ=255)

                          aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGAttt                     <  1:6492035/49‑1 (MQ=255)

                          aagaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTc                    <  1:1026280/50‑1 (MQ=255)

                            gaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTcc                   >  1:4072734/1‑49 (MQ=255)

                            gaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTcc                   >  1:3337065/1‑49 (MQ=255)

                            gaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCa                  <  1:4397285/50‑1 (MQ=255)

                            gaaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCa                  <  1:3087303/50‑1 (MQ=255)

                             aaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCaa                 >  1:5236296/1‑50 (MQ=255)

                             aaagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCaa                 <  1:5877821/50‑1 (MQ=255)

                              aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc                <  1:7162755/50‑1 (MQ=255)

                              aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc                <  1:3130072/50‑1 (MQ=255)

                              aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc                <  1:6245659/50‑1 (MQ=255)

                              aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc                >  1:301249/1‑50 (MQ=255)

                              aagTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc                <  1:809097/50‑1 (MQ=255)

                               agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc                >  1:1058109/1‑49 (MQ=255)

                               agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc                >  1:1184941/1‑49 (MQ=255)

                               agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACg               <  1:4939227/50‑1 (MQ=255)

                               agTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACg               <  1:701070/50‑1 (MQ=255)

                                gTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc                >  1:845508/1‑48 (MQ=255)

                                gTAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAAc                >  1:4628218/1‑48 (MQ=255)

                                 tAATCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg             <  1:2243485/50‑1 (MQ=255)

                                  aaTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg             >  1:6192417/1‑49 (MQ=255)

                                  aaTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAg             >  1:1467783/1‑49 (MQ=255)

                                   aTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa           >  1:4667705/1‑50 (MQ=255)

                                   aTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa           >  1:7816794/1‑50 (MQ=255)

                                   aTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa           >  1:4533565/1‑50 (MQ=255)

                                   aTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa           >  1:3928176/1‑50 (MQ=255)

                                   aTCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa           <  1:2843480/50‑1 (MQ=255)

                                    tCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa           >  1:7286151/1‑49 (MQ=255)

                                    tCTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTa           >  1:2225150/1‑49 (MQ=255)

                                     cTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt          >  1:5593918/1‑49 (MQ=255)

                                       atatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac       >  1:7881539‑M1/1‑47 (MQ=255)

                                       atatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac       >  1:2777589‑M1/1‑47 (MQ=255)

                                        tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact      >  1:7179842‑M1/1‑46 (MQ=255)

                                        tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact      >  1:2266312‑M1/1‑46 (MQ=255)

                                        tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac       <  1:7650532‑M1/49‑4 (MQ=255)

                                        tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa        <  1:2633174‑M1/48‑3 (MQ=255)

                                        tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa         <  1:5695138‑M1/47‑2 (MQ=255)

                                         atTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt     >  1:7837203‑M1/1‑45 (MQ=255)

                                          tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt    >  1:2392885‑M1/1‑44 (MQ=255)

                                          tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt    >  1:5427513‑M1/1‑44 (MQ=255)

                                          tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt     <  1:1844204‑M1/49‑6 (MQ=255)

                                          tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt     <  1:50126‑M1/49‑6 (MQ=255)

                                           ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt    >  1:2700757‑M1/1‑43 (MQ=255)

                                           ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt    >  1:6867340‑M1/1‑43 (MQ=255)

                                            tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga  >  1:6316424‑M1/1‑42 (MQ=255)

                                            tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga  >  1:7227223‑M1/1‑42 (MQ=255)

                                            tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttg   <  1:3136127‑M1/49‑8 (MQ=255)

                                            tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttg   <  1:6893107‑M1/49‑8 (MQ=255)

TAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCA  >  NC_000913/3720547‑3720641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`