| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 74 [0] | [0] 76 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 66 (0.620) | 41/96 | 0.3 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:4094824/50‑1 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 1:6238402/49‑1 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAGCACTCTA > 1:2050563/1‑50 GGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGACACTCTAC > 1:7008604/1‑50 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:1578137/50‑1 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:1318607/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCTTCCcc > 1:4509819/1‑47 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCA < 1:8048411/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACCCTACCcc > 1:4089022/1‑47 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAA < 1:7800667/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:4815036/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:7051264/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:128448/50‑1 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATG < 1:6302586/49‑1 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATG < 1:2697878/49‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATTCCCCCACCTCAATGTt > 1:6855728/1‑49 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:309511/50‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:7214360/50‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 1:1481361/49‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAATGgg > 1:1917617/1‑47 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:6816839/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:3857581/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:775137/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGAACACCCTACCCCAATGTGTAT > 1:3427574/1‑50 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 1:3138112/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:5928480/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:3308688/50‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAA < 1:7101052/50‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACA < 1:499894/49‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACA < 1:6478613/49‑1 GCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATAT < 1:701335/50‑1 ACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCC < 1:1762812/50‑1 ACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCC < 1:3865898/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 1:2553784/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 1:3191005/49‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:6155363/50‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTC < 1:3605046/49‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTC < 1:5926479/49‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:2349750/50‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:6570477/50‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:7189890/50‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:864576/50‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 1:2356800/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTG < 1:3656897/50‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:6872090/49‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:7673910/49‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:1443157/49‑1 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:7729165/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:5123433/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:1330944/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG < 1:7038733/50‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG < 1:6937772/50‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:3548694/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG < 1:1333020/50‑1 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGG < 1:2343184/50‑1 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGG < 1:6907334/50‑1 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGG < 1:1579430/50‑1 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 1:101934/50‑1 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG < 1:7491054/50‑1 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:4129610/1‑50 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 1:1936481/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT > 1:2114879/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 1:2434821/50‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC < 1:7990455/49‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGCTTCTG < 1:1044034/50‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG < 1:6418802/50‑1 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:7915090/1‑49 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:7679622/1‑48 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:6849415/1‑48 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:4693160/1‑48 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:4540431/1‑48 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:8048298/1‑48 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:2859074/1‑48 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:2420699/1‑48 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |