| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 135 [0] | [0] 132 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 130 (1.230) | 67/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
Only 100 of 135 total aligned reads displayed.
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:4248422/1‑49TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:6266292/49‑1 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:6504534/1‑50 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:5954678/1‑50 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:2242555/1‑50 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAA < 1:433336/49‑1 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAA < 1:2775525/49‑1 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG > 1:4368327/1‑50 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:1459116/49‑1 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:7990771/49‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:4223507/1‑50 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC < 1:2204713/50‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC < 1:5826715/50‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG < 1:3018459/49‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG < 1:8132130/49‑1 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCG < 1:7490909/50‑1 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCG < 1:4167550/50‑1 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:3790106/1‑49 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:5185731/1‑49 TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:4028459/1‑48 TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:8118395/1‑48 ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:2566426/1‑47 ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:3572378/1‑47 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGA < 1:4369490/48‑1 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGA < 1:6740215/48‑1 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:6902307/1‑46 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:7677844/1‑46 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:3740967/1‑46 GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA > 1:4526329/1‑50 GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA > 1:511913/1‑50 TATATCCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT < 1:885123/47‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT < 1:7990638/50‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT < 1:7040662/50‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT < 1:2593260/50‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT < 1:4180318/48‑1 ATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:3819890/1‑49 ATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:3131098/1‑49 ATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:8251646/1‑49 ATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:6163155/1‑49 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA < 1:4501012/50‑1 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT > 1:6666664/1‑49 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT > 1:5124024/1‑49 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT > 1:7989697/1‑49 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA < 1:5715162/50‑1 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAG > 1:2439190/1‑50 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAG < 1:4804083/50‑1 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT > 1:6221242/1‑50 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT > 1:4626941/1‑50 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT > 1:3389845/1‑50 TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT > 1:6827756/1‑50 GAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTG > 1:2730280/1‑50 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC > 1:1323711/1‑50 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC < 1:4741407/50‑1 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTG < 1:6499586/49‑1 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT < 1:3074777/48‑1 ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCC < 1:1198223/50‑1 ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC > 1:6420938/1‑49 TGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA < 1:2145727/50‑1 GTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT > 1:5789681/1‑50 GTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT > 1:6102696/1‑50 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG < 1:7933051/50‑1 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG < 1:6257039/50‑1 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT < 1:7304684/49‑1 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT < 1:4593848/49‑1 TAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:5999644/1‑49 AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGC < 1:155567/49‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG < 1:3829335/50‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC < 1:4934050/50‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC > 1:7643545/1‑50 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC < 1:721087/50‑1 CATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC > 1:5355907/1‑50 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG > 1:3662774/1‑50 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG > 1:4937592/1‑50 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC < 1:3644964/48‑1 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC < 1:4562159/48‑1 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG > 1:1862375/1‑50 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG < 1:5323868/50‑1 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG > 1:4650183/1‑50 TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG > 1:7793009/1‑49 gCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG > 1:15686/2‑50 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAA < 1:147463/49‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAA < 1:6364427/49‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG < 1:2208625/47‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG < 1:2654895/49‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG < 1:2301621/49‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG < 1:3562828/49‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG < 1:6268338/49‑1 GGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT > 1:7919784/1‑50 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT < 1:3061587/50‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT < 1:274503/49‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT < 1:1113900/49‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT < 1:5758963/49‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT < 1:1211837/49‑1 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG > 1:6751368/1‑50 AGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG > 1:927941/1‑50 AGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG > 1:6342891/1‑50 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG < 1:792475/50‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG < 1:4950698/50‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG < 1:3083033/49‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC < 1:4857766/50‑1 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |