| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 171 [0] | [0] 166 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 165 (1.530) | 75/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 171 total aligned reads displayed.
ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGA > NC_000913/3362112‑3362209 | aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc > 1:3594424/1‑50 (MQ=255)aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc < 1:6697919/50‑1 (MQ=255)aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc < 1:415502/50‑1 (MQ=255)aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc < 1:4300574/50‑1 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 1:4811198‑M1/50‑4 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 1:7503273‑M1/50‑4 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 1:8095392‑M1/50‑4 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa > 1:7829754‑M1/1‑47 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACta < 1:5941975‑M1/49‑3 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACta < 1:7159663‑M1/49‑3 (MQ=255) tCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa > 1:5367303‑M1/1‑46 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa < 1:2738983‑M1/50‑7 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:772047‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa < 1:4394916‑M1/50‑7 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa < 1:4204480‑M1/50‑7 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat < 1:4834939‑M1/50‑8 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat < 1:1471449‑M1/50‑8 (MQ=255) acacATTACATTCACTGTATTTATAATAACATCAATGAATACtaacaatg < 1:6094113‑M1/50‑9 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg < 1:2261686‑M1/50‑9 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg < 1:3264412‑M1/50‑9 (MQ=255) cacaTTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatgc < 1:5403644‑M1/50‑10 (MQ=255) cacaTTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatgc > 1:368566‑M1/1‑41 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 1:5180702‑M1/1‑40 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 1:7693776‑M1/1‑40 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:7173953‑M1/1‑39 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:461101‑M1/1‑39 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:4978902‑M1/1‑39 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:1525829‑M1/1‑39 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgacg < 1:203961‑M1/50‑12 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgg < 1:3860000‑M1/50‑13 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:927797‑M1/1‑38 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:6971671‑M1/1‑38 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga < 1:3404025‑M1/50‑14 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggac < 1:2334218‑M1/49‑15 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggac < 1:5045818‑M1/49‑15 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggac < 1:194860‑M1/49‑15 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag < 1:1321024‑M1/50‑17 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag < 1:5498703‑M1/50‑17 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagg < 1:8028858‑M1/50‑18 (MQ=255) ttCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagga < 1:4821403‑M1/50‑19 (MQ=255) ttCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:3712343‑M1/1‑32 (MQ=255) tCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggag > 1:6287766‑M1/1‑31 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta < 1:7457630‑M1/50‑22 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta < 1:1495908‑M1/50‑22 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagt < 1:602675‑M1/49‑21 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaagaatgccggacaggagtac < 1:1553111‑M1/50‑23 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac < 1:456944‑M1/50‑23 (MQ=255) gTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtacta > 1:73333‑M1/1‑26 (MQ=255) gTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtacta > 1:3937299‑M1/1‑26 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat < 1:5333737‑M1/50‑26 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat < 1:1139334‑M1/50‑26 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat < 1:196703‑M1/50‑26 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:3266197‑M1/1‑25 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtacta < 1:4023833‑M1/49‑25 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtact < 1:4652880‑M1/48‑24 (MQ=255) aTTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:1272917‑M1/1‑24 (MQ=255) aTTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:5446671‑M1/1‑24 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatca < 1:6369577‑M1/50‑28 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatca < 1:3616039‑M1/50‑28 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatc < 1:5260281‑M1/49‑27 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:5780663‑M1/1‑23 (MQ=255) ttATAACAACATCAATGAATACtaacaatgccggacaggagtactatcag > 1:1110180‑M1/1‑22 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg > 1:1302019‑M1/1‑20 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg > 1:1473457‑M1/1‑20 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg > 1:1849301‑M1/1‑20 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca > 1:8045193‑M1/1‑19 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca > 1:5653197‑M1/1‑19 (MQ=255) aacaacATCAATGAATACtaacaatgccggacaggagtactatcaggcat > 1:5974455‑M1/1‑18 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt > 1:7004458‑M1/1‑17 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt < 1:4222647‑M1/50‑34 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcat < 1:6958981‑M1/49‑33 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcat < 1:5617496‑M1/49‑33 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc < 1:364809‑M1/50‑35 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc < 1:493260‑M1/50‑35 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc < 1:3389591‑M1/50‑35 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:5896298‑M1/1‑12 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:4365071‑M1/1‑12 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttt < 1:5162341‑M1/50‑40 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttt < 1:4718277‑M1/50‑40 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:200179‑M1/1‑11 (MQ=255) cAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:7089157‑M1/1‑10 (MQ=255) cAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:2949389‑M1/1‑10 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgtttta < 1:7860692‑M1/49‑41 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:562077‑M1/1‑9 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata > 1:2851933‑M1/1‑8 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata > 1:7632381‑M1/1‑8 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata < 1:4241515‑M1/50‑43 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:2283482‑M1/1‑7 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:3342077‑M1/1‑7 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac < 1:3518997‑M1/50‑44 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac < 1:5056764‑M1/50‑44 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:6488881‑M1/1‑7 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga > 1:179508‑M1/1‑5 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacg < 1:5605282‑M1/49‑45 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat < 1:6174520‑M1/50‑47 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat < 1:3791685‑M1/50‑47 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:3571651‑M1/50‑48 (MQ=255) aCtaacaatgccggacaggagtactatcaggcattcgttttatacgatcg > 1:2593863‑M1/1‑2 (MQ=255) aCtaacaatgccggacaggagtactatcaggcattcgttttatacgatcg > 1:54704‑M1/1‑2 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcg < 1:2218781‑M1/49‑49 (MQ=255) | ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGA > NC_000913/3362112‑3362209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |