| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 97 [0] | [0] 97 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 95 (0.880) | 46/98 | 0.2 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
TGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTT > NC_000913/1482208‑1482305 | cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa < 1:1208081‑M2/2‑1 (MQ=255)cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa < 1:2008427‑M2/2‑1 (MQ=255)cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa < 1:1644247‑M2/2‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATg < 1:7743560‑M2/4‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGCa < 1:357690‑M2/6‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGCa < 1:2817904‑M2/6‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGCa < 1:7959563‑M2/6‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGCa < 1:1822935‑M2/6‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGCa < 1:8231948‑M2/6‑1 (MQ=255) cggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:4743986‑M2/44‑47 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg < 1:4319073‑M2/7‑1 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg > 1:507365‑M2/43‑49 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg < 1:5122016‑M2/7‑1 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa < 1:1671943‑M2/8‑1 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa < 1:1675019‑M2/8‑1 (MQ=255) gcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaa < 1:5043294‑M2/9‑1 (MQ=255) gcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaa < 1:3035390‑M2/9‑1 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:1147662‑M2/41‑50 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:2977602‑M2/41‑50 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:5751623‑M2/41‑50 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:8296040‑M2/41‑50 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:3422366‑M2/40‑49 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc > 1:3742654‑M2/39‑49 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc > 1:6922686‑M2/39‑49 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACa < 1:6782297‑M2/12‑1 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAACaa > 1:6592262‑M2/38‑50 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt < 1:5379798‑M2/14‑1 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt < 1:1668550‑M2/14‑1 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg < 1:7582236‑M2/15‑1 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg < 1:1944826‑M2/15‑1 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg < 1:7195941‑M2/15‑1 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc < 1:2126170‑M2/16‑1 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc < 1:1051119‑M2/16‑1 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc > 1:730096‑M2/35‑50 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc > 1:5862817‑M2/35‑50 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc > 1:6397246‑M2/35‑50 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc > 1:8016030‑M2/35‑50 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc > 1:3970978‑M2/35‑50 (MQ=255) acaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt < 1:6480353‑M2/17‑1 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg < 1:7136819‑M2/18‑1 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg < 1:2246164‑M2/18‑1 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg < 1:4217778‑M2/18‑1 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg < 1:2502899‑M2/18‑1 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg < 1:2743283‑M2/18‑1 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt < 1:3138568‑M2/19‑1 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt > 1:5463709‑M2/32‑50 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt < 1:7791312‑M2/19‑1 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt > 1:5147774‑M2/32‑50 (MQ=255) agataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc < 1:4025031‑M2/20‑1 (MQ=255) agataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc < 1:2202280‑M2/20‑1 (MQ=255) agataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc > 1:7899386‑M2/31‑50 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCg < 1:302896‑M2/21‑1 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa < 1:7158014‑M2/22‑1 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg < 1:8224311‑M2/24‑1 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc > 1:5727216‑M2/25‑50 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc > 1:5903850‑M2/25‑50 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc < 1:2568582‑M2/26‑1 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc > 1:6168288‑M2/25‑50 (MQ=255) cgccagcacatcgcagctatacTATGCAGAAACAATGCTGTCGATGgctg < 1:3712947‑M2/28‑1 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg > 1:1970073‑M2/23‑50 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg > 1:8106344‑M2/23‑50 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg < 1:3202104‑M2/28‑1 (MQ=255) gccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctgc > 1:5603231‑M2/22‑50 (MQ=255) tcgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTc < 1:7507294‑M2/38‑1 (MQ=255) tcgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTc < 1:7374725‑M2/38‑1 (MQ=255) cgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:5341102‑M2/12‑48 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:1600241‑M2/11‑47 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:3093760‑M2/11‑47 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:6257659‑M2/11‑47 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCa < 1:6760060‑M2/39‑1 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCa < 1:2348279‑M2/39‑1 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAg < 1:4706760‑M2/40‑1 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAg < 1:2912071‑M2/40‑1 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:6897440‑M2/10‑50 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:5958729‑M2/10‑50 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa < 1:4611050‑M2/41‑1 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:1516458‑M2/9‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:1647882‑M2/9‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc < 1:2429091‑M2/42‑1 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:7187424‑M2/9‑50 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg > 1:4561000‑M2/7‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 1:4453255‑M2/6‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt < 1:5574665‑M2/45‑1 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 1:6293581‑M2/6‑50 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg > 1:416183‑M2/5‑50 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:3769830‑M2/46‑1 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:7612072‑M2/46‑1 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:2583002‑M2/46‑1 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg > 1:1528394‑M2/5‑50 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:1181530‑M2/46‑1 (MQ=255) tacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGc < 1:2121681‑M2/47‑1 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:6774565‑M2/3‑50 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:826748‑M2/3‑50 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:4977846‑M2/3‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt < 1:6622577‑M2/49‑1 (MQ=255) tATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCttt > 1:121270/1‑50 (MQ=255) tATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCttt > 1:997302/1‑50 (MQ=255) | TGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTT > NC_000913/1482208‑1482305 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |