| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2558699 | 2565488 | 6790 | 105 [0] | [0] 104 | intZ–[eutA] | intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 0 (0.000) | 90 (1.000) | 57/82 | 0.0 | 100% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 0 (0.000) | coding (1396/1404 nt) | eutA | reactivating factor for ethanolamine ammonia‑lyase EutBC | |||||
Only 100 of 104 total aligned reads displayed.
AGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGA > NC_000913/2565440‑2565538 | attgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagg < 1:3996514‑M2/1‑1 (MQ=255) ttgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagga < 1:4256333‑M2/2‑1 (MQ=255) ttgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagga < 1:6690313‑M2/2‑1 (MQ=255) tgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagga > 1:3959085‑M2/48‑49 (MQ=255) gccgaacaatgtggtctttagtttcataagtcgttccctcaggaaggaa < 1:6256958‑M2/3‑1 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGaaa < 1:7363492‑M2/4‑1 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAAt > 1:4625662‑M2/46‑50 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAAt < 1:4594600‑M2/5‑1 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAAt > 1:6921098‑M2/46‑50 (MQ=255) ccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAAt < 1:4036837‑M2/5‑1 (MQ=255) cgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATg < 1:1431442‑M2/6‑1 (MQ=255) cgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATg < 1:1475958‑M2/6‑1 (MQ=255) cgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATg > 1:2093366‑M2/45‑50 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc < 1:6207766‑M2/7‑1 (MQ=255) aacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCg < 1:6693848‑M2/8‑1 (MQ=255) agaatgtggcctttagtttcataagtcgttccctcaggaagGAAATGc > 1:4192241‑M2/42‑48 (MQ=255) acaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:7237736‑M2/42‑48 (MQ=255) acaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGa < 1:4543857‑M2/9‑1 (MQ=255) acaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGa < 1:5125678‑M2/9‑1 (MQ=255) caatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAg > 1:7308152‑M2/41‑50 (MQ=255) caatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAg > 1:3485562‑M2/41‑50 (MQ=255) caatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAg < 1:163732‑M2/10‑1 (MQ=255) caatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAg < 1:4569635‑M2/10‑1 (MQ=255) caatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAg > 1:141058‑M2/41‑50 (MQ=255) aatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGt < 1:6552221‑M2/11‑1 (MQ=255) aatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGt > 1:1019336‑M2/40‑50 (MQ=255) aatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGt > 1:2044026‑M2/40‑50 (MQ=255) atgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGt > 1:450281‑M2/39‑49 (MQ=255) tgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGa > 1:5391448‑M2/38‑50 (MQ=255) tgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGa < 1:8154741‑M2/13‑1 (MQ=255) tggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAtt > 1:683442‑M2/36‑50 (MQ=255) tggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAtt > 1:8266043‑M2/36‑50 (MQ=255) tggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAt < 1:3277110‑M2/14‑1 (MQ=255) tggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAt < 1:4999141‑M2/14‑1 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt > 1:1474180‑M2/34‑49 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtc < 1:3046620‑M2/17‑1 (MQ=255) tctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtca > 1:7583340‑M2/33‑50 (MQ=255) tctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtca < 1:4871212‑M2/18‑1 (MQ=255) tctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtca < 1:7014104‑M2/18‑1 (MQ=255) ctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac > 1:7508200‑M2/32‑50 (MQ=255) ctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac > 1:8032614‑M2/32‑50 (MQ=255) tttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc > 1:113198‑M2/31‑50 (MQ=255) tttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc > 1:3065236‑M2/31‑50 (MQ=255) tttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc > 1:2015252‑M2/31‑50 (MQ=255) ttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccg > 1:3966388‑M2/30‑50 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGAtttctc < 1:2189096‑M2/19‑3 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgt > 1:2317266‑M2/29‑50 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccg < 1:4964979‑M2/21‑1 (MQ=255) agtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgt < 1:146589‑M2/22‑1 (MQ=255) agtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgt < 1:4873327‑M2/22‑1 (MQ=255) agtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgt > 1:7136724‑M2/28‑49 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtca < 1:6882739‑M2/24‑1 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtca < 1:1181147‑M2/24‑1 (MQ=255) tttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcac < 1:3101989‑M2/25‑1 (MQ=255) tcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcacc < 1:7843796‑M2/26‑1 (MQ=255) tcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcacc < 1:1068703‑M2/26‑1 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcaccg < 1:6351470‑M2/27‑1 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCgg > 1:913161‑M2/23‑50 (MQ=255) ataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCgg > 1:5638024‑M2/22‑49 (MQ=255) ataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCgg < 1:762482‑M2/28‑1 (MQ=255) taagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGca > 1:8166827‑M2/21‑50 (MQ=255) aagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGca > 1:7732671‑M2/20‑49 (MQ=255) gtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACaa < 1:1061727‑M2/33‑1 (MQ=255) gtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACaa < 1:6529864‑M2/33‑1 (MQ=255) gtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACaa > 1:7617105‑M2/18‑50 (MQ=255) gtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACaa > 1:7529169‑M2/18‑50 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAc > 1:8115622‑M2/17‑50 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAc > 1:4727669‑M2/17‑50 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAc < 1:416027‑M2/34‑1 (MQ=255) cgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc > 1:1552916‑M2/16‑50 (MQ=255) cgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc > 1:442511‑M2/16‑50 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc < 1:5952912‑M2/35‑1 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc > 1:1456023‑M2/15‑49 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc < 1:207195‑M2/35‑1 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCg < 1:5155547‑M2/36‑1 (MQ=255) ttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGa > 1:1201663‑M2/14‑50 (MQ=255) ttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGa < 1:7974388‑M2/37‑1 (MQ=255) ttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGa < 1:2679836‑M2/37‑1 (MQ=255) ttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGa > 1:2216041‑M2/14‑50 (MQ=255) tccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGAt > 1:2594731‑M2/13‑50 (MQ=255) ccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGAt < 1:6955862‑M2/38‑1 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc > 1:7085189‑M2/11‑50 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc > 1:7765933‑M2/11‑50 (MQ=255) ctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCg < 1:5760633‑M2/41‑1 (MQ=255) ctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCg < 1:7833495‑M2/41‑1 (MQ=255) ctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCg < 1:6822077‑M2/41‑1 (MQ=255) caggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 1:4178972‑M2/8‑49 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGcc > 1:2746895‑M2/7‑49 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGcc > 1:3042003‑M2/7‑49 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCa < 1:5765023‑M2/44‑1 (MQ=255) aggaagGAAATGCGAGTGATTCCACCGTCACCGGCACAACCGATCCGcc > 1:6738324‑M2/7‑49 (MQ=255) ggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCa > 1:287948‑M2/6‑49 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaa > 1:3677538‑M2/5‑49 (MQ=255) agGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaaa < 1:6026425‑M2/48‑1 (MQ=255) agGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaaa < 1:7578057‑M2/48‑1 (MQ=255) agGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 1:7714684‑M2/3‑48 (MQ=255) gGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 1:7780049‑M2/2‑47 (MQ=255) gGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 1:5771103‑M2/2‑47 (MQ=255) gaaATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaaa > 1:3225423/1‑48 (MQ=255) gaaATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAaga < 1:7101808/50‑1 (MQ=255) | AGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGA > NC_000913/2565440‑2565538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |