| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 121 [0] | [0] 115 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 111 (1.070) +GA |
59/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
Only 100 of 115 total aligned reads displayed.
CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 | ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 1:1187547‑M2/1‑1 (MQ=255)ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 1:7224795‑M2/1‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:868250‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:2643955‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc > 1:6849743‑M2/49‑50 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg > 1:962402‑M2/48‑50 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg > 1:4524878‑M2/48‑50 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg < 1:5363413‑M2/3‑1 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg > 1:620969‑M2/48‑50 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg > 1:6518925‑M2/48‑50 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg < 1:8140749‑M2/3‑1 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:7404476‑M2/47‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:723218‑M2/47‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:1453439‑M2/47‑50 (MQ=255) tctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:5344588‑M2/46‑49 (MQ=255) tctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:6809207‑M2/46‑49 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa > 1:458445‑M2/45‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa < 1:1732691‑M2/6‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa < 1:5740780‑M2/6‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt < 1:789920‑M2/7‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAt < 1:6280581‑M2/7‑1 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt < 1:6663252‑M2/10‑1 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 1:7755208‑M2/40‑49 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg > 1:5797850‑M2/39‑49 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg > 1:3716866‑M2/39‑49 (MQ=255) gcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGaa < 1:5629191‑M2/13‑1 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt < 1:7611757‑M2/14‑1 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt < 1:7240006‑M2/14‑1 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt < 1:210694‑M2/15‑1 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:3154530‑M2/36‑50 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:4394969‑M2/36‑50 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAttt < 1:5637073‑M2/16‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAttt < 1:5175529‑M2/16‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:2169607‑M2/35‑49 (MQ=255) gacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc > 1:4994942‑M2/33‑50 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc > 1:639482‑M2/32‑49 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc > 1:4655178‑M2/32‑49 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc < 1:1074391‑M2/18‑1 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc > 1:2941202‑M2/32‑49 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc < 1:2737835‑M2/18‑1 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg < 1:7616896‑M2/19‑1 (MQ=255) catcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg > 1:37636‑M2/31‑49 (MQ=255) catcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGa < 1:2961487‑M2/20‑1 (MQ=255) atcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGaa < 1:3693113‑M2/21‑1 (MQ=255) atcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGaa < 1:4677641‑M2/21‑1 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 1:1413848‑M2/22‑1 (MQ=255) caatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:5488432‑M2/28‑50 (MQ=255) caatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:2477841‑M2/28‑50 (MQ=255) caatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:2323930‑M2/28‑50 (MQ=255) caatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:7664263‑M2/28‑50 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACgg < 1:699790‑M2/24‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:5165719‑M2/27‑49 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:3296593‑M2/27‑49 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:2670878‑M2/27‑49 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:632946‑M2/27‑49 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg < 1:3963534‑M2/23‑1 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGa < 1:2800601‑M2/25‑1 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGa < 1:3225684‑M2/25‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:7413131‑M2/26‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:2442730‑M2/26‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:829869‑M2/26‑1 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg < 1:1732903‑M2/27‑1 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg < 1:4864428‑M2/27‑1 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt > 1:3267229‑M2/21‑50 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt > 1:6254786‑M2/21‑50 (MQ=255) gtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt > 1:6131283‑M2/20‑49 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTa < 1:5725062‑M2/32‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTa < 1:1052517‑M2/32‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:5726466‑M2/17‑49 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:2151232‑M2/17‑49 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 1:4503036‑M2/14‑50 (MQ=255) gcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTg < 1:5159874‑M2/38‑1 (MQ=255) gcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTg < 1:5235986‑M2/38‑1 (MQ=255) cagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGa < 1:7588052‑M2/39‑1 (MQ=255) cagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGa < 1:2789946‑M2/39‑1 (MQ=255) cagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGa > 1:5417695‑M2/12‑50 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAc > 1:1465968‑M2/11‑50 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAc < 1:8168742‑M2/40‑1 (MQ=255) gcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACt > 1:6153516‑M2/10‑50 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:2462102‑M2/9‑50 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:4085118‑M2/8‑49 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:4519658‑M2/8‑49 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:5381951‑M2/8‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 1:777755‑M2/7‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTa < 1:2197084‑M2/44‑1 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTa < 1:4056472‑M2/44‑1 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa < 1:2607078‑M2/45‑1 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:3309730‑M2/6‑50 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:4903994‑M2/6‑50 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:8078290‑M2/6‑50 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:3177586‑M2/6‑50 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:1667338‑M2/6‑50 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa < 1:6093480‑M2/45‑1 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:2373791‑M2/46‑1 (MQ=255) agaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg > 1:5789533‑M2/4‑50 (MQ=255) agaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg > 1:7495254‑M2/4‑50 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg < 1:2519195‑M2/48‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:5484552‑M2/47‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:1366820‑M2/47‑1 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCa > 1:6842279/1‑50 (MQ=255) | CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |