| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 150 [0] | [0] 143 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 134 (1.270) | 66/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
Only 100 of 143 total aligned reads displayed.
GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAG > NC_000913/3906550‑3906648 | aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc < 1:1993614‑M2/1‑1 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:871822‑M2/49‑49 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCg < 1:5322850‑M2/2‑1 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCg < 1:3251754‑M2/2‑1 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCg < 1:295230‑M2/2‑1 (MQ=255) actctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGAc > 1:4444242‑M2/47‑50 (MQ=255) actctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGAc > 1:5562058‑M2/47‑50 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt > 1:1270484‑M2/46‑50 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt > 1:1122668‑M2/46‑50 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt > 1:478735‑M2/46‑50 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt < 1:7752664‑M2/5‑1 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt < 1:3233453‑M2/5‑1 (MQ=255) tctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:6331948‑M2/45‑50 (MQ=255) tgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCa > 1:2982898‑M2/43‑50 (MQ=255) tgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCa > 1:8170612‑M2/43‑50 (MQ=255) tgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCa > 1:446934‑M2/43‑50 (MQ=255) tgagtctaataatgtagcctcgtctcttgcgaggataagtgcCGACTTCa > 1:5574199‑M2/43‑50 (MQ=255) gagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:7160162‑M2/42‑50 (MQ=255) gagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:6734527‑M2/42‑50 (MQ=255) agtttaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc < 1:555183‑M2/9‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTc < 1:160631‑M2/7‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTc < 1:1190485‑M2/7‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:6277689‑M2/41‑49 (MQ=255) gtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:236579‑M2/40‑48 (MQ=255) gtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:5688449‑M2/40‑48 (MQ=255) gtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCa < 1:377010‑M2/11‑1 (MQ=255) gtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCa < 1:4843906‑M2/11‑1 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:4472197‑M2/39‑50 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:6452860‑M2/39‑50 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg < 1:6530890‑M2/12‑1 (MQ=255) gtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:4685623‑M2/38‑49 (MQ=255) aataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt > 1:4961167‑M2/36‑50 (MQ=255) aataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt > 1:2271782‑M2/36‑50 (MQ=255) aataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt > 1:6630088‑M2/36‑50 (MQ=255) aataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt > 1:728595‑M2/36‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt < 1:4852316‑M2/16‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt > 1:3684748‑M2/35‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt < 1:7299540‑M2/15‑1 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:5115751‑M2/34‑50 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:1272851‑M2/34‑50 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:2886483‑M2/34‑50 (MQ=255) aatgtagcctcgtgtcttgcgaggataggtgcCGACTTCACCAGTATtct > 1:6219861‑M2/33‑50 (MQ=255) aatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtct > 1:4913418‑M2/33‑50 (MQ=255) aatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtct > 1:1085980‑M2/33‑50 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtctc > 1:6773278‑M2/32‑50 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtctc > 1:2523367‑M2/32‑50 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtct < 1:1598752‑M2/18‑1 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct > 1:6208364‑M2/31‑50 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct < 1:2408974‑M2/20‑1 (MQ=255) cgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct < 1:6886875‑M2/20‑1 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg > 1:7646138‑M2/29‑50 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg < 1:6541408‑M2/22‑1 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt < 1:5628676‑M2/23‑1 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTa > 1:1228930‑M2/26‑50 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTa < 1:5741138‑M2/25‑1 (MQ=255) ctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTAt > 1:6443333‑M2/25‑50 (MQ=255) ctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTAt < 1:6906191‑M2/26‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:5446206‑M2/22‑49 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:6651668‑M2/28‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:6003091‑M2/28‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTc < 1:3046566‑M2/29‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTc < 1:3369885‑M2/29‑1 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCa < 1:7968875‑M2/30‑1 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCa < 1:8281591‑M2/30‑1 (MQ=255) gtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg > 1:683851‑M2/20‑50 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAgg > 1:7035759‑M2/19‑50 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAgg < 1:6148470‑M2/32‑1 (MQ=255) cttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGt > 1:4606081‑M2/18‑50 (MQ=255) cttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGt > 1:6886138‑M2/18‑50 (MQ=255) cttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGt > 1:7468005‑M2/18‑50 (MQ=255) ttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtt > 1:7646712‑M2/17‑50 (MQ=255) tgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGttt > 1:2467177‑M2/16‑50 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtt < 1:312554‑M2/34‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtt < 1:7875088‑M2/34‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtt < 1:3556715‑M2/34‑1 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtttt < 1:5364507‑M2/36‑1 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc > 1:8006061‑M2/13‑50 (MQ=255) aggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGcc > 1:5233144‑M2/12‑50 (MQ=255) ggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCt < 1:1653290‑M2/40‑1 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg > 1:4736139‑M2/10‑50 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg > 1:2644852‑M2/10‑50 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg > 1:2548401‑M2/10‑50 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc < 1:1157690‑M2/42‑1 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg < 1:7165141‑M2/43‑1 (MQ=255) aagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg > 1:5436161‑M2/7‑49 (MQ=255) aagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg > 1:3970482‑M2/7‑49 (MQ=255) agtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGaa > 1:2014387‑M2/6‑50 (MQ=255) agtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGaa < 1:4024466‑M2/45‑1 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt < 1:5832021‑M2/46‑1 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt < 1:862730‑M2/46‑1 (MQ=255) gcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg > 1:4274553‑M2/3‑49 (MQ=255) gcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg > 1:4320911‑M2/3‑49 (MQ=255) gcCGAATTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg > 1:6523538‑M2/3‑49 (MQ=255) cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg > 1:5965988‑M2/2‑48 (MQ=255) cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGc < 1:3648361‑M2/48‑1 (MQ=255) cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCa < 1:7850646‑M2/49‑1 (MQ=255) cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCa < 1:7910582‑M2/49‑1 (MQ=255) cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCa < 1:4614752‑M2/49‑1 (MQ=255) cGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAg > 1:7695306/1‑50 (MQ=255) cGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAg > 1:5315535/1‑50 (MQ=255) | GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAG > NC_000913/3906550‑3906648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |