| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 177 [0] | [0] 176 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 171 (1.620) | 73/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 177 total aligned reads displayed.
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962516‑1962614 | aaGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:624541‑M1/1‑50 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc > 1:6728265‑M1/1‑49 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc < 1:1728108‑M1/50‑2 (MQ=255) aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc < 1:3312110‑M1/50‑2 (MQ=255) aCATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc < 1:2739824‑M1/50‑4 (MQ=255) aCATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:7576038‑M1/1‑47 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCAAGCGCGTcgct < 1:6853883‑M1/50‑5 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta < 1:4743566‑M1/50‑6 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:4066679‑M1/1‑45 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac < 1:103144‑M1/50‑7 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac < 1:4231407‑M1/50‑7 (MQ=255) cGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg > 1:2625600‑M1/1‑43 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:4129122‑M1/1‑42 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:2524408‑M1/1‑42 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:2153112‑M1/1‑42 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg < 1:5040802‑M1/49‑8 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:1583199‑M1/50‑10 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:4441837‑M1/50‑11 (MQ=255) ccTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag < 1:3072598‑M1/50‑12 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag > 1:1368562‑M1/1‑38 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag > 1:5664621‑M1/1‑38 (MQ=255) cTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag > 1:1989668‑M1/1‑38 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag > 1:4895030‑M1/1‑35 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaa < 1:622341‑M1/49‑15 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaa < 1:3168374‑M1/49‑15 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaa < 1:7250523‑M1/49‑15 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaa < 1:7396150‑M1/49‑15 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagca < 1:1417458‑M1/48‑14 (MQ=255) ttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag > 1:5385724‑M1/1‑34 (MQ=255) ttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag > 1:7487809‑M1/1‑34 (MQ=255) ttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag > 1:6348913‑M1/1‑34 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc < 1:322265‑M1/49‑17 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc > 1:309548‑M1/1‑33 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagca > 1:1900500‑M1/1‑32 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaa < 1:6643026‑M1/49‑19 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaa > 1:298491‑M1/1‑31 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaa < 1:1837497‑M1/49‑19 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:8214104‑M1/50‑24 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:5978816‑M1/50‑24 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 1:1288034‑M1/49‑23 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:2895616‑M1/1‑27 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:7929662‑M1/1‑27 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaa < 1:3607586‑M1/48‑22 (MQ=255) gTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg > 1:60648‑M1/1‑26 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaa < 1:5077889‑M1/50‑26 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaa < 1:1459390‑M1/50‑26 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaa < 1:6419732‑M1/50‑26 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatga > 1:382828‑M1/1‑25 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatga > 1:2103384‑M1/1‑25 (MQ=255) tattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:136213‑M1/1‑24 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa < 1:8280142‑M1/49‑27 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:3788351‑M1/1‑23 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa < 1:5187504‑M1/49‑27 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaac < 1:5791403‑M1/49‑28 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:500152‑M1/1‑22 (MQ=255) taAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:3661161‑M1/1‑21 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:2098617‑M1/1‑20 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag > 1:5522675‑M1/1‑20 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagg < 1:104823‑M1/49‑31 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacagg < 1:5723404‑M1/49‑31 (MQ=255) aCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa < 1:4573968‑M1/50‑33 (MQ=255) aCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa > 1:6753186‑M1/1‑18 (MQ=255) aCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa < 1:3337211‑M1/50‑33 (MQ=255) aCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa > 1:1832366‑M1/1‑18 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat < 1:1683491‑M1/50‑34 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat < 1:3219296‑M1/50‑34 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat < 1:7222631‑M1/50‑34 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa > 1:5110458‑M1/1‑17 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat > 1:7831868‑M1/1‑16 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat > 1:2238422‑M1/1‑16 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat > 1:5410073‑M1/1‑16 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa < 1:6953364‑M1/50‑36 (MQ=255) aCTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat > 1:6111247‑M1/1‑14 (MQ=255) aCTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat > 1:3731657‑M1/1‑14 (MQ=255) aCTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat > 1:2702172‑M1/1‑14 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaa < 1:1618965‑M1/50‑41 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaa < 1:2182498‑M1/50‑41 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcga < 1:7330921‑M1/49‑40 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcga > 1:8008034‑M1/1‑10 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcg < 1:7569934‑M1/48‑39 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcg < 1:2226999‑M1/48‑39 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa < 1:2827808‑M1/50‑42 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa > 1:3977004‑M1/1‑9 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa > 1:7214212‑M1/1‑9 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:3482926‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:5994321‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:1028302‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat < 1:5750795‑M1/50‑43 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:5581472‑M1/1‑8 (MQ=255) gcgcGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg < 1:5855073‑M1/50‑45 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg > 1:7129275‑M1/1‑5 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga < 1:4668174‑M1/50‑47 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:852453‑M1/1‑3 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat < 1:7097810‑M1/50‑48 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:7044598‑M1/1‑3 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:5363846‑M1/1‑3 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg > 1:1781328‑M1/1‑2 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg > 1:6906666‑M1/1‑2 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg > 1:2299231‑M1/1‑2 (MQ=255) tcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgt < 1:3600453‑M1/50‑50 (MQ=255) | AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962516‑1962614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |