Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,204,350 Δ32,368 bp yehL–preA 30 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2204350 2236717 32368 125 [0] [0] 121 yehL–preA yehL,yehM,yehP,yehQ,yehR,yehS,btsR,btsS,mlrA,yohO,yehW,yehX,yehY,osmF,bglX,dld,pbpG,yohC,yohD,yohF,mdtQ,yohP,dusC,yohJ,yohK,cdd,sanA,yeiS,preT,preA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 22043490 (0.000)121 (1.120) 68/98 0.0 100% intergenic (+60/‑247) yehK/yehL uncharacterized protein YehK/putative AAA(+) MoxR family ATPase YehL
?NC_000913 2236718 = 0 (0.000)intergenic (+218/+25) preA/mglC NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit

Only 100 of 125 total aligned reads displayed.

ATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCG  >  NC_000913/2204300‑2204398
                                                 |                                                 
ataatTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATtat                                                   <  1:7419101/50‑1 (MQ=255)
ataatTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATtat                                                   >  1:2601401/1‑50 (MQ=255)
ataatTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATtat                                                   <  1:1952939/50‑1 (MQ=255)
ataatTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATtat                                                   <  1:4640886/50‑1 (MQ=255)
 tAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATt                                                  >  1:1583008‑M1/1‑49 (MQ=255)
 tAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATt                                                  <  1:7127833‑M1/50‑2 (MQ=255)
 tAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATt                                                  <  1:5574991‑M1/50‑2 (MQ=255)
 tAATTCAAATTGGTCCGATCCGGCGCAACGTACCAATGGCCTGGATTATt                                                  <  1:8235364‑M1/50‑2 (MQ=255)
  aaTTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATt                                                  >  1:3799188‑M1/1‑48 (MQ=255)
  aaTTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATt                                                  >  1:6145483‑M1/1‑48 (MQ=255)
   aTTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtga                                                >  1:1739232‑M1/1‑47 (MQ=255)
   aTTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtga                                                >  1:7739223‑M1/1‑47 (MQ=255)
   aTTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtg                                                 <  1:6119550‑M1/49‑3 (MQ=255)
    ttCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgac                                               <  1:1853397‑M1/50‑5 (MQ=255)
    ttCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgac                                               <  1:3356503‑M1/50‑5 (MQ=255)
     tCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgacc                                              >  1:2579533‑M1/1‑45 (MQ=255)
      cAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTTTtgacc                                              >  1:4009296‑M1/1‑44 (MQ=255)
      cAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgacc                                              <  1:4832473‑M1/49‑6 (MQ=255)
      cAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgacc                                              >  1:2685938‑M1/1‑44 (MQ=255)
      cAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgacc                                              >  1:2319528‑M1/1‑44 (MQ=255)
      cAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgacc                                              <  1:1793966‑M1/49‑6 (MQ=255)
       aaaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccg                                             >  1:4391185‑M1/1‑43 (MQ=255)
       aaaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccg                                             <  1:1968508‑M1/49‑7 (MQ=255)
       aaaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccg                                             >  1:5497033‑M1/1‑43 (MQ=255)
        aaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaa                                           >  1:2495878‑M1/1‑42 (MQ=255)
        aaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaa                                           >  1:1449963‑M1/1‑42 (MQ=255)
        aaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaa                                           >  1:3217219‑M1/1‑42 (MQ=255)
        aaTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaa                                           >  1:3965742‑M1/1‑42 (MQ=255)
         aTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaat                                          >  1:765698‑M1/1‑41 (MQ=255)
         aTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaat                                          >  1:779787‑M1/1‑41 (MQ=255)
         aTTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaat                                          >  1:4950912‑M1/1‑41 (MQ=255)
          ttGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatg                                         <  1:2889328‑M1/50‑11 (MQ=255)
               ccGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggac                                    >  1:7614092‑M1/1‑35 (MQ=255)
                cGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggacc                                   <  1:6375290‑M1/50‑17 (MQ=255)
                cGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggac                                    >  1:4521627‑M1/1‑34 (MQ=255)
                cGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggac                                    >  1:199350‑M1/1‑34 (MQ=255)
                cGATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggac                                    <  1:6084079‑M1/49‑16 (MQ=255)
                 gATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggacca                                  <  1:6539123‑M1/50‑18 (MQ=255)
                 gATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggacca                                  >  1:7707123‑M1/1‑33 (MQ=255)
                 gATCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggacca                                  >  1:7448117‑M1/1‑33 (MQ=255)
                  aTCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccac                                 <  1:7469629‑M1/50‑19 (MQ=255)
                  aTCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggacca                                  >  1:6805128‑M1/1‑32 (MQ=255)
                  aTCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggacca                                  >  1:6461095‑M1/1‑32 (MQ=255)
                   tCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccaca                                <  1:4136040‑M1/50‑20 (MQ=255)
                   tCCGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccaca                                <  1:7110051‑M1/50‑20 (MQ=255)
                     cGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacatt                              <  1:7602331‑M1/50‑22 (MQ=255)
                     cGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacatt                              >  1:2612869‑M1/1‑29 (MQ=255)
                     cGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacatt                              >  1:4647652‑M1/1‑29 (MQ=255)
                     cGGCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacat                               <  1:8151796‑M1/49‑21 (MQ=255)
                      ggCGCAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattc                             <  1:1945885‑M1/50‑23 (MQ=255)
                       gcgcAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattca                            <  1:6575184‑M1/50‑24 (MQ=255)
                       gcgcAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattca                            >  1:7811310‑M1/1‑27 (MQ=255)
                       gcgcAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattca                            <  1:6175221‑M1/50‑24 (MQ=255)
                        cgcAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattca                            >  1:3285254‑M1/1‑26 (MQ=255)
                         gcAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcaca                          <  1:1916176‑M1/50‑26 (MQ=255)
                         gcAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcaca                          <  1:3181210‑M1/50‑26 (MQ=255)
                          cAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacat                         <  1:4954056‑M1/50‑27 (MQ=255)
                          cAACGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacat                         <  1:6456312‑M1/50‑27 (MQ=255)
                            aCGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatca                       <  1:7629897‑M1/50‑29 (MQ=255)
                            aCGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatca                       <  1:3155345‑M1/50‑29 (MQ=255)
                            aCGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatca                       <  1:5162888‑M1/50‑29 (MQ=255)
                            aCGTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatca                       >  1:1356184‑M1/1‑22 (MQ=255)
                              gTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatt                     >  1:3848443‑M1/1‑20 (MQ=255)
                              gTCCCAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatt                     <  1:5441360‑M1/50‑31 (MQ=255)
                                 ccAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttc                   <  1:1311318‑M1/49‑33 (MQ=255)
                                  cAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttctt                 <  1:2765173‑M1/50‑35 (MQ=255)
                                  cAATGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttctt                 <  1:7383040‑M1/50‑35 (MQ=255)
                                   aaTGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttctta                <  1:2208986‑M1/50‑36 (MQ=255)
                                   aaTGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttctta                <  1:3204858‑M1/50‑36 (MQ=255)
                                   aaTGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttctta                <  1:4460333‑M1/50‑36 (MQ=255)
                                    aTGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttac               <  1:4954550‑M1/50‑37 (MQ=255)
                                    aTGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttac               >  1:6601096‑M1/1‑14 (MQ=255)
                                     tGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttacg              <  1:7976756‑M1/50‑38 (MQ=255)
                                     tGGCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttacg              <  1:4882940‑M1/50‑38 (MQ=255)
                                      ggCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgc             >  1:6345856‑M1/1‑12 (MQ=255)
                                      ggCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgc             >  1:5265462‑M1/1‑12 (MQ=255)
                                       gCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcg            <  1:8160310‑M1/50‑40 (MQ=255)
                                       gCCTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgc             <  1:1755403‑M1/49‑39 (MQ=255)
                                        ccTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcgc           <  1:4389482‑M1/50‑41 (MQ=255)
                                        ccTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcgc           >  1:6220550‑M1/1‑10 (MQ=255)
                                        ccTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcgc           >  1:6136335‑M1/1‑10 (MQ=255)
                                        ccTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcgc           >  1:5832631‑M1/1‑10 (MQ=255)
                                         cTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcg          >  1:5396806‑M1/1‑9 (MQ=255)
                                         cTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcg          <  1:7288091‑M1/50‑42 (MQ=255)
                                         cTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcg          <  1:6342533‑M1/50‑42 (MQ=255)
                                         cTGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcg          <  1:5825019‑M1/50‑42 (MQ=255)
                                          tGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcg          >  1:5778454‑M1/1‑8 (MQ=255)
                                          tGGATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcg          >  1:7970750‑M1/1‑8 (MQ=255)
                                            gATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcgtat       <  1:5857264‑M1/50‑45 (MQ=255)
                                            gATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcgtat       <  1:1689478‑M1/50‑45 (MQ=255)
                                            gATTATtgaccgaatgcggaccacattcacatcatttcttacgcgcgt         <  1:729701‑M1/48‑43 (MQ=255)
                                              ttattgaccgaatgcggaccacattcacatcatttcttacgcgcgtattt     <  1:7690390‑M1/50‑47 (MQ=255)
                                              ttattgaccgaatgcggaccacattcacatcatttcttacgcgcgtattt     <  1:7706833‑M1/50‑47 (MQ=255)
                                              ttattgaccgaatgcggaccacattcacatcatttcttacgcgcgtattt     >  1:5564392‑M1/1‑4 (MQ=255)
                                              ttattgaccgaatgcggaccacattcacatcatttcttacgcgcgtattt     <  1:3112827‑M1/50‑47 (MQ=255)
                                              ttattgaccgaatgcggaccacattcacatcatttcttacgcgcgtattt     <  1:834618‑M1/50‑47 (MQ=255)
                                                 ttgaccgaatgcggaccacattcacatcatttcttacgcgcgtatttcag  <  1:5533269‑M1/50‑50 (MQ=255)
                                                 ttgaccgaatgcggaccacattcacatcatttcttacgcgcgtatttca   <  1:6392656‑M1/49‑49 (MQ=255)
                                                 ttgaccgaatgcggaccacattcacatcatttcttacgcgcgtatttca   <  1:345244‑M1/49‑49 (MQ=255)
                                                 ttgaccgaatgcggaccacattcacatcatttcttacgcgcgtatttca   <  1:3307893‑M1/49‑49 (MQ=255)
                                                 |                                                 
ATAATTCAAATTGGTCCGATCCGGCGCAACGTCCCAATGGCCTGGATTATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCG  >  NC_000913/2204300‑2204398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑