| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 150 [0] | [0] 147 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 145 (1.340) | 74/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
Only 100 of 150 total aligned reads displayed.
TGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCA > NC_000913/2466496‑2466592 | gACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:240359/1‑48 (MQ=255) gACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:5280140/1‑48 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:2113745/1‑47 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta < 1:95368‑M1/49‑3 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta < 1:7491706‑M1/49‑3 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtaga < 1:629367‑M1/50‑5 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtaga < 1:5283964‑M1/50‑5 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag < 1:281331‑M1/50‑6 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag < 1:8116514‑M1/50‑6 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:7803139‑M1/1‑44 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc < 1:4823367‑M1/50‑7 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:5702695‑M1/1‑44 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc < 1:212216‑M1/50‑7 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc < 1:8000610‑M1/50‑7 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:6626328‑M1/1‑44 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:3228929‑M1/1‑43 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 1:1905434‑M1/1‑42 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 1:1490942‑M1/1‑42 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 1:2999998‑M1/1‑42 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata < 1:1336734‑M1/50‑11 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:2695555‑M1/1‑40 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccat < 1:8022583‑M1/49‑10 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatac < 1:5506240‑M1/50‑12 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:3487183‑M1/1‑39 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:7866246‑M1/1‑39 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccataca < 1:7213171‑M1/50‑13 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:1213209‑M1/1‑38 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:1919815‑M1/1‑38 (MQ=255) aGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag > 1:4823760‑M1/1‑37 (MQ=255) gTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagc > 1:6501868‑M1/1‑36 (MQ=255) gTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagc > 1:5009593‑M1/1‑36 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc > 1:6377847‑M1/1‑35 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc < 1:405923‑M1/50‑16 (MQ=255) aTAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca < 1:6732712‑M1/50‑19 (MQ=255) aTAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 1:2774554‑M1/1‑32 (MQ=255) aTAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 1:3975077‑M1/1‑32 (MQ=255) tAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcac < 1:6309151‑M1/50‑20 (MQ=255) aaaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca > 1:2075368‑M1/1‑30 (MQ=255) aaaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca > 1:5447740‑M1/1‑30 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac < 1:5618178‑M1/50‑22 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac > 1:2512‑M1/1‑29 (MQ=255) aataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacact < 1:4129457‑M1/50‑23 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:539138‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 1:4245676‑M1/50‑24 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:5168840‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:8253130‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:3578545‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 1:7738479‑M1/50‑24 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:4642827‑M1/1‑26 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:1666966‑M1/1‑25 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:1836641‑M1/1‑25 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat < 1:6696976‑M1/50‑27 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:3973910‑M1/1‑24 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga < 1:7137581‑M1/49‑26 (MQ=255) ttttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatg < 1:4571834‑M1/50‑28 (MQ=255) ttttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:2486388‑M1/1‑23 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:3903000‑M1/1‑22 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag > 1:4413977‑M1/1‑21 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatga < 1:5938257‑M1/49‑29 (MQ=255) tACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag < 1:4894629‑M1/49‑30 (MQ=255) tACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag < 1:6830405‑M1/49‑30 (MQ=255) tACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag < 1:5764168‑M1/49‑30 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc > 1:6143976‑M1/1‑19 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg < 1:81975‑M1/49‑31 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg < 1:845437‑M1/49‑31 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg < 1:90400‑M1/49‑31 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg < 1:2917453‑M1/49‑31 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg < 1:4296828‑M1/49‑31 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 1:3676432‑M1/1‑18 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct > 1:4207973‑M1/1‑17 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct < 1:3370812‑M1/50‑34 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg > 1:1417166‑M1/1‑16 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg > 1:7391674‑M1/1‑16 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg > 1:2399752‑M1/1‑16 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:2319095‑M1/1‑15 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:1294100‑M1/1‑15 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtca < 1:6672556‑M1/50‑38 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtca < 1:6022460‑M1/50‑38 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 1:3670634‑M1/1‑12 (MQ=255) gATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagt > 1:2012299‑M1/1‑11 (MQ=255) gATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagt > 1:7614010‑M1/1‑11 (MQ=255) gATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagt < 1:8105837‑M1/50‑40 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcgtgtcagtt < 1:7757625‑M1/50‑41 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt < 1:3237985‑M1/50‑41 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt < 1:3364141‑M1/50‑41 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt > 1:6945577‑M1/1‑10 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt < 1:1146616‑M1/50‑41 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt > 1:375801‑M1/1‑9 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 1:2812177‑M1/1‑8 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 1:96133‑M1/1‑8 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 1:2373796‑M1/1‑8 (MQ=255) tttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:22876‑M1/1‑7 (MQ=255) tttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc < 1:142185‑M1/49‑43 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:7892991‑M1/1‑6 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:2383888‑M1/1‑6 (MQ=255) tACCCtagagccatacagcctcacactcgatgaggcctgtcagtttctt > 1:7260378‑M1/1‑5 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcagtttctta < 1:7128406‑M1/49‑46 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcagtttctta < 1:5832672‑M1/49‑46 (MQ=255) ccctagagccatacagcctcacactcgatgaggcctgtcagtttcttaa > 1:5113755‑M1/1‑3 (MQ=255) ctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:1769520‑M1/1‑1 (MQ=255) | TGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCA > NC_000913/2466496‑2466592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |