BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,090,347	Δ708 bp	coding (1‑708/708 nt)	endA →	DNA‑specific endonuclease I

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3090347	3091054	708	94 [0]	[0] 94	endA	DNA‑specific endonuclease I

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3090346	0 (0.000)	90 (0.830)	59/98	0.0	100%	intergenic (+94/‑1)	yggI/endA	conserved protein YggI/DNA‑specific endonuclease I
*	?	NC_000913	3091055 =	0 (0.000)	90 (0.830)	59/98	0.0	100%	intergenic (+1/‑79)	endA/rsmE	DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase

ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTT  >  NC_000913/3090296‑3090394

aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg                                                  >  1:8306515/1‑50 (MQ=255)

aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg                                                  >  1:3798364/1‑50 (MQ=255)

 ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg                                                  <  1:279733/49‑1 (MQ=255)

 ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg                                                  <  1:6092308/49‑1 (MQ=255)

   aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcct                                               <  1:8052151‑M1/50‑4 (MQ=255)

   aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc                                                >  1:7698139‑M1/1‑47 (MQ=255)

    aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                              >  1:4746293‑M1/1‑46 (MQ=255)

     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac                                             <  1:7987398‑M1/50‑6 (MQ=255)

     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac                                             <  1:2339936‑M1/50‑6 (MQ=255)

     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                              >  1:6740749‑M1/1‑45 (MQ=255)

      aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca                                            <  1:7971996‑M1/50‑7 (MQ=255)

      aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca                                            >  1:5209006‑M1/1‑44 (MQ=255)

       cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                           >  1:5009897‑M1/1‑43 (MQ=255)

       cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                           >  1:864107‑M1/1‑43 (MQ=255)

       cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                           >  1:7455321‑M1/1‑43 (MQ=255)

       cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                           <  1:1323607‑M1/50‑8 (MQ=255)

        aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGactacact                                          <  1:5417568‑M1/50‑9 (MQ=255)

         gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta                                         <  1:5376756‑M1/50‑10 (MQ=255)

         gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta                                         <  1:2071617‑M1/50‑10 (MQ=255)

          cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag                                        >  1:3479872‑M1/1‑40 (MQ=255)

           tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                       >  1:7266371‑M1/1‑39 (MQ=255)

           tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                       >  1:6751581‑M1/1‑39 (MQ=255)

            ttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg                                      >  1:4243730‑M1/1‑38 (MQ=255)

            ttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg                                      >  1:2356603‑M1/1‑38 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg                                      <  1:5489956‑M1/49‑13 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                       <  1:4308077‑M1/48‑12 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                       <  1:7840404‑M1/48‑12 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                                       <  1:6567609‑M1/48‑12 (MQ=255)

              cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                                     >  1:3789049‑M1/1‑36 (MQ=255)

              cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                                     <  1:3478099‑M1/49‑14 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                                   >  1:3658536‑M1/1‑35 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                                   >  1:3984538‑M1/1‑35 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggg                                    <  1:1535765‑M1/49‑15 (MQ=255)

                cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat                                  >  1:4688765‑M1/1‑34 (MQ=255)

                 tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                                 >  1:2208084‑M1/1‑33 (MQ=255)

                  aCGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc                                >  1:4386390‑M1/1‑32 (MQ=255)

                   cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct                               <  1:24619‑M1/50‑20 (MQ=255)

                   cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct                               >  1:5701501‑M1/1‑31 (MQ=255)

                   cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc                                <  1:1750766‑M1/49‑19 (MQ=255)

                   cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                                 <  1:680221‑M1/48‑18 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                              <  1:324145‑M1/50‑21 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                              >  1:5431753‑M1/1‑30 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                              <  1:2594673‑M1/50‑21 (MQ=255)

                     ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt                             >  1:5764933‑M1/1‑29 (MQ=255)

                      tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                            >  1:338493‑M1/1‑28 (MQ=255)

                      tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                            >  1:3263881‑M1/1‑28 (MQ=255)

                      tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                            >  1:7600277‑M1/1‑28 (MQ=255)

                       gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                            <  1:4601294‑M1/49‑23 (MQ=255)

                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg                          >  1:5221413‑M1/1‑26 (MQ=255)

                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg                          >  1:3654711‑M1/1‑26 (MQ=255)

                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg                          >  1:3175504‑M1/1‑26 (MQ=255)

                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt                           <  1:4870385‑M1/49‑24 (MQ=255)

                         tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                         >  1:5591996‑M1/1‑25 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta                       <  1:5652963‑M1/50‑28 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta                       <  1:5805792‑M1/50‑28 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt                        <  1:5494311‑M1/49‑27 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt                        <  1:7455525‑M1/49‑27 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt                        >  1:6742304‑M1/1‑23 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt                        <  1:7920827‑M1/49‑27 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                         <  1:2207640‑M1/48‑26 (MQ=255)

                            cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa                      <  1:1773237‑M1/50‑29 (MQ=255)

                            cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa                      >  1:4607096‑M1/1‑22 (MQ=255)

                            cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa                      <  1:6505487‑M1/50‑29 (MQ=255)

                             tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac                     >  1:910108‑M1/1‑21 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttatccc                   <  1:3769537‑M1/50‑32 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc                   <  1:4073267‑M1/50‑32 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc                    <  1:605953‑M1/49‑31 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc                    <  1:7793077‑M1/49‑31 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac                     <  1:1881827‑M1/48‑30 (MQ=255)

                                ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc                  <  1:3842016‑M1/50‑33 (MQ=255)

                                ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc                  >  1:3702195‑M1/1‑18 (MQ=255)

                                  ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct                 <  1:602469‑M1/49‑34 (MQ=255)

                                  ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct                 <  1:3766374‑M1/49‑34 (MQ=255)

                                  ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct                 <  1:7007008‑M1/49‑34 (MQ=255)

                                   tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac               >  1:2132190‑M1/1‑15 (MQ=255)

                                   tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac               >  1:3951391‑M1/1‑15 (MQ=255)

                                   tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac               >  1:544401‑M1/1‑15 (MQ=255)

                                   tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta                <  1:772558‑M1/49‑35 (MQ=255)

                                    aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc              >  1:6786532‑M1/1‑14 (MQ=255)

                                    aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc              >  1:7656928‑M1/1‑14 (MQ=255)

                                      cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc             >  1:5525500‑M1/1‑12 (MQ=255)

                                       acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca           >  1:7602922‑M1/1‑11 (MQ=255)

                                             gaagTGcctacactagcgggattctttttgttaacccctaccccacgcgt      <  1:7883037‑M1/49‑45 (MQ=255)

                                              aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta     >  1:2360516‑M1/1‑5 (MQ=255)

                                              aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta     >  1:325560‑M1/1‑5 (MQ=255)

                                              aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta     >  1:6022669‑M1/1‑5 (MQ=255)

                                              aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta     >  1:1406092‑M1/1‑5 (MQ=255)

                                              aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta     <  1:988361‑M1/50‑46 (MQ=255)

                                               aGTGcctacactagcgggattctttttgttaacccctaccccacgcgtac    <  1:629749‑M1/50‑47 (MQ=255)

                                                gTGcctacactagcgggattctttttgttaacccctaccccacgcgtaca   <  1:1116681‑M1/50‑48 (MQ=255)

                                                 tGcctacactagcgggattctttttgttaacccctaccccacgcgtacaa  >  1:7388337‑M1/1‑2 (MQ=255)

                                                 tGcctacactagcgggattctttttgttaacccctaccccacgcgtacaa  <  1:3873628‑M1/50‑49 (MQ=255)

                                                 tGcctacactagcgggattctttttgttaacccctaccccacgcgtacaa  <  1:5859390‑M1/50‑49 (MQ=255)

                                                 tGcctacactagcgggattctttttgttaacccctaccccacgcgtacaa  >  1:1380033‑M1/1‑2 (MQ=255)

ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTT  >  NC_000913/3090296‑3090394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`