| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 169 [0] | [0] 174 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 168 (1.590) | 76/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
Only 100 of 174 total aligned reads displayed.
ATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGT > NC_000913/1652713‑1652811 | catcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaa < 1:4902412‑M2/1‑1 (MQ=255)catcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaa < 1:4743470‑M2/1‑1 (MQ=255) tcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgc > 1:5823646‑M2/48‑50 (MQ=255) tcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgc > 1:7126055‑M2/48‑50 (MQ=255) cccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:1018463‑M2/47‑50 (MQ=255) cccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:7431668‑M2/47‑50 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:5644950‑M2/46‑49 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:4938556‑M2/46‑49 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:4293127‑M2/46‑49 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg < 1:2915940‑M2/4‑1 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:6834115‑M2/46‑49 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:7819510‑M2/46‑49 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:130692‑M2/46‑49 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg < 1:8274174‑M2/4‑1 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:2218658‑M2/45‑48 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:198718‑M2/45‑48 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:7858067‑M2/45‑48 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCa < 1:2546732‑M2/6‑1 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAg < 1:3372404‑M2/7‑1 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAg > 1:4625033‑M2/44‑50 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAg < 1:3168877‑M2/7‑1 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAg > 1:7856557‑M2/44‑50 (MQ=255) tgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGt < 1:7633631‑M2/8‑1 (MQ=255) gctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTg > 1:2827579‑M2/42‑50 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTg < 1:1533540‑M2/9‑1 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGc > 1:6135563‑M2/41‑50 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGc > 1:3128720‑M2/41‑50 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGc > 1:5954705‑M2/41‑50 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCa < 1:5038059‑M2/13‑1 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCa < 1:5348605‑M2/13‑1 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCa < 1:2263573‑M2/13‑1 (MQ=255) ttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAg < 1:4279207‑M2/14‑1 (MQ=255) ttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGc < 1:7025550‑M2/15‑1 (MQ=255) ttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGc < 1:2301291‑M2/15‑1 (MQ=255) attgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGcc < 1:5859307‑M2/16‑1 (MQ=255) attgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGcc < 1:3274524‑M2/16‑1 (MQ=255) ttgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCa < 1:3668246‑M2/17‑1 (MQ=255) ttgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCAt > 1:2406462‑M2/33‑50 (MQ=255) ttgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCAt < 1:440947‑M2/18‑1 (MQ=255) tgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATc > 1:6663995‑M2/32‑50 (MQ=255) gacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATc < 1:4434528‑M2/19‑1 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc > 1:3709291‑M2/30‑50 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc < 1:3393990‑M2/21‑1 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc < 1:4117466‑M2/21‑1 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc > 1:1699220‑M2/30‑50 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc > 1:5686731‑M2/30‑50 (MQ=255) cacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc > 1:6334897‑M2/29‑49 (MQ=255) acacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGa > 1:3204192‑M2/28‑50 (MQ=255) cacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGa > 1:4994241‑M2/27‑49 (MQ=255) cacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGa > 1:6422140‑M2/27‑49 (MQ=255) cacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGAt < 1:5133064‑M2/24‑1 (MQ=255) aaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATAct < 1:2349670‑M2/27‑1 (MQ=255) aaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActg > 1:2156659‑M2/23‑50 (MQ=255) aaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActg > 1:8165860‑M2/23‑50 (MQ=255) aaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActg < 1:154150‑M2/28‑1 (MQ=255) aaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActg > 1:2659198‑M2/23‑50 (MQ=255) aagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgc > 1:4085126‑M2/22‑50 (MQ=255) aagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgc > 1:6771702‑M2/22‑50 (MQ=255) agcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgct > 1:2662750‑M2/21‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:7329984‑M2/18‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:838356‑M2/18‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:1221546‑M2/18‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct < 1:2986244‑M2/33‑1 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:4836139‑M2/18‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:3956997‑M2/18‑50 (MQ=255) ttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCtt > 1:5596870‑M2/17‑50 (MQ=255) ttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCtt > 1:2761009‑M2/17‑50 (MQ=255) ttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCtt > 1:6548163‑M2/17‑50 (MQ=255) tgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt > 1:7119545‑M2/16‑50 (MQ=255) gaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt < 1:6611643‑M2/35‑1 (MQ=255) gaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt > 1:2200561‑M2/15‑49 (MQ=255) gaggaacagtgagaAGAGCAGTGCCCAGCCATCCCGATACTGCTGCttt > 1:4545660‑M2/15‑49 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTc < 1:5801570‑M2/36‑1 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTc < 1:8070991‑M2/36‑1 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTc < 1:7256033‑M2/36‑1 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCa < 1:3897881‑M2/37‑1 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCa > 1:1471927‑M2/14‑50 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCa > 1:5390285‑M2/14‑50 (MQ=255) ggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAc < 1:2055200‑M2/38‑1 (MQ=255) gaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAc > 1:7099701‑M2/12‑49 (MQ=255) aacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAcc > 1:6201561‑M2/11‑49 (MQ=255) cagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCaaa > 1:8002675‑M2/9‑50 (MQ=255) cagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCaaa > 1:4329224‑M2/9‑50 (MQ=255) agtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAt > 1:600457‑M2/8‑50 (MQ=255) agtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAt < 1:2594195‑M2/43‑1 (MQ=255) agtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAt < 1:2713067‑M2/43‑1 (MQ=255) agtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAt < 1:5146363‑M2/43‑1 (MQ=255) gtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATc > 1:8210548‑M2/7‑50 (MQ=255) tgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATcc > 1:6056922‑M2/6‑50 (MQ=255) tgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATcc > 1:1340065‑M2/6‑50 (MQ=255) tgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATcc > 1:554356‑M2/6‑50 (MQ=255) agaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCtt < 1:2354462‑M2/47‑1 (MQ=255) agaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCtt < 1:6730533‑M2/47‑1 (MQ=255) gaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTa < 1:6617187‑M2/48‑1 (MQ=255) gaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTa < 1:1371087‑M2/48‑1 (MQ=255) aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAg > 1:3783972‑M2/2‑50 (MQ=255) aGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGt < 1:2168116/50‑1 (MQ=255) aGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGt < 1:7672701/50‑1 (MQ=255) aGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGt < 1:3481934/50‑1 (MQ=255) aGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGt > 1:1049204/1‑50 (MQ=255) | ATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGT > NC_000913/1652713‑1652811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |