| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 111 [0] | [0] 109 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 106 (0.980) | 65/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
Only 100 of 109 total aligned reads displayed.
CTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACG > NC_000913/4325118‑4325215 | acgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGa > 1:3056031‑M2/49‑50 (MQ=255)acgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGa > 1:4326806‑M2/49‑50 (MQ=255)acgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGa > 1:80706‑M2/49‑50 (MQ=255)acgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGa < 1:6316673‑M2/2‑1 (MQ=255) cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt > 1:1082503‑M2/48‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg < 1:6066324‑M2/4‑1 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg < 1:1225788‑M2/4‑1 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg < 1:7155847‑M2/4‑1 (MQ=255) ggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:5179763‑M2/46‑49 (MQ=255) ggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGc < 1:1051239‑M2/5‑1 (MQ=255) ggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGc < 1:3343370‑M2/5‑1 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCa < 1:6868024‑M2/6‑1 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCa < 1:2472194‑M2/6‑1 (MQ=255) acctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAg < 1:2207171‑M2/7‑1 (MQ=255) cctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGc < 1:3943445‑M2/8‑1 (MQ=255) ctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGcc < 1:7413750‑M2/9‑1 (MQ=255) ctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGcc > 1:8204218‑M2/42‑50 (MQ=255) ctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGcc < 1:4041211‑M2/9‑1 (MQ=255) gcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTc > 1:1821694‑M2/40‑50 (MQ=255) gcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTc > 1:5130560‑M2/40‑50 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCt < 1:1484304‑M2/10‑1 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTcc < 1:5735795‑M2/12‑1 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTc < 1:7687539‑M2/11‑1 (MQ=255) ctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 1:1083161‑M2/38‑50 (MQ=255) ctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 1:318671‑M2/38‑50 (MQ=255) tgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 1:1566568‑M2/37‑49 (MQ=255) tgatacccgccgcccagcgatttcatcaaccgaatgGATGCAGCCTccc > 1:3976992‑M2/37‑49 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTa < 1:414728‑M2/15‑1 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTa < 1:2037086‑M2/15‑1 (MQ=255) cccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaa > 1:2433599‑M2/32‑49 (MQ=255) ccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaaaa < 1:3762216‑M2/20‑1 (MQ=255) cgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAg < 1:482246‑M2/21‑1 (MQ=255) cgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAg > 1:864762‑M2/30‑50 (MQ=255) gccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGt > 1:466303‑M2/29‑50 (MQ=255) ccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTg > 1:2359684‑M2/28‑50 (MQ=255) cgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTgg > 1:6989589‑M2/27‑50 (MQ=255) cgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTgg < 1:3202597‑M2/24‑1 (MQ=255) cgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTgg < 1:4532506‑M2/24‑1 (MQ=255) cgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTgg > 1:2537785‑M2/27‑50 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt < 1:3039127‑M2/26‑1 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt > 1:1022247‑M2/25‑50 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt > 1:7640347‑M2/25‑50 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt < 1:1931427‑M2/26‑1 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc > 1:3556451‑M2/24‑50 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc < 1:3002990‑M2/27‑1 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc > 1:41593‑M2/24‑50 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc > 1:4014292‑M2/24‑50 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc > 1:7170055‑M2/24‑50 (MQ=255) ccagcgatttcatcaactgaatgGATGAAGCCTCCCTAAAAAAGGGGCTc > 1:5847645‑M2/24‑50 (MQ=255) cagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTcc < 1:3369683‑M2/28‑1 (MQ=255) cagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTcc < 1:1491872‑M2/28‑1 (MQ=255) cagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTcc < 1:2510783‑M2/28‑1 (MQ=255) cagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTcc < 1:3627629‑M2/28‑1 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa > 1:6802032‑M2/22‑50 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa > 1:1929770‑M2/22‑50 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa < 1:1746859‑M2/29‑1 (MQ=255) gcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCAt < 1:622443‑M2/30‑1 (MQ=255) gcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCAt > 1:5980452‑M2/21‑50 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 1:2869493‑M2/31‑1 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc > 1:3578282‑M2/20‑50 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc > 1:8299241‑M2/20‑50 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc > 1:5692218‑M2/20‑50 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 1:5657696‑M2/31‑1 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg < 1:1575801‑M2/32‑1 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg < 1:8073112‑M2/32‑1 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 1:3448598‑M2/18‑50 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt < 1:2539585‑M2/33‑1 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 1:5719767‑M2/18‑50 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg < 1:137702‑M2/34‑1 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg > 1:5253689‑M2/17‑50 (MQ=255) tcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg < 1:6712824‑M2/35‑1 (MQ=255) catcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg > 1:1765964‑M2/14‑50 (MQ=255) catcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg > 1:4013972‑M2/14‑50 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCgg < 1:8305180‑M2/38‑1 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg < 1:2647260‑M2/37‑1 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg < 1:8292999‑M2/37‑1 (MQ=255) tcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGa < 1:8101836‑M2/39‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatt < 1:5335248‑M2/41‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatt < 1:7778209‑M2/41‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatt < 1:1137992‑M2/41‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatt < 1:4281507‑M2/41‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat < 1:1226952‑M2/40‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat > 1:5231632‑M2/10‑49 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat > 1:1475770‑M2/8‑50 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat < 1:2348516‑M2/43‑1 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat > 1:5381146‑M2/8‑50 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat > 1:507888‑M2/8‑50 (MQ=255) tgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt > 1:5565632‑M2/7‑50 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt < 1:443663‑M2/44‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattatt < 1:1643091‑M2/44‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt < 1:3463736‑M2/46‑1 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt > 1:5067641‑M2/5‑50 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtg < 1:1341950‑M2/45‑1 (MQ=255) atgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgtg < 1:5142218‑M2/47‑1 (MQ=255) atgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt > 1:1285578‑M2/4‑49 (MQ=255) atgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt > 1:6244422‑M2/4‑49 (MQ=255) gGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc > 1:1223225‑M2/2‑50 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc < 1:3359677/49‑1 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc < 1:5072154/49‑1 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACg < 1:3824430/50‑1 (MQ=255) | CTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACG > NC_000913/4325118‑4325215 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |