Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,090,282 C→T intergenic (+30/‑65) yggI → / → endA conserved protein YggI/DNA‑specific endonuclease I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,090,2820CT100.0% 413.9 / NA 110intergenic (+30/‑65)yggI/endAconserved protein YggI/DNA‑specific endonuclease I
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (58/52);  total (58/52)

Only 100 of 110 total aligned reads displayed.

CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT  >  NC_000913/3090235‑3090328
                                               |                                              
cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              <  1:1075496/50‑1 (MQ=255)
cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              <  1:2061371/50‑1 (MQ=255)
cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              <  1:1744728/50‑1 (MQ=255)
cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              <  1:583835/50‑1 (MQ=255)
cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              <  1:6629019/50‑1 (MQ=255)
 aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg                                             >  1:6590764/1‑50 (MQ=255)
 aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg                                             >  1:7051355/1‑50 (MQ=255)
 aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTgg                                             <  1:7933945/50‑1 (MQ=255)
  gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc                                            >  1:3995607/1‑50 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           <  1:4477218/50‑1 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           <  1:665418/50‑1 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           <  1:4892413/50‑1 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           >  1:1910530/1‑50 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           <  1:7247317/50‑1 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           <  1:2268554/50‑1 (MQ=255)
     ggTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa                                         >  1:8294425/1‑50 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTg                                          <  1:3427691/48‑1 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                        <  1:3978614/50‑1 (MQ=255)
        tGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      >  1:1137997/1‑50 (MQ=255)
        tGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      >  1:4214470/1‑50 (MQ=255)
         gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      <  1:8154426/49‑1 (MQ=255)
         gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      <  1:3024315/49‑1 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc                                     <  1:4015019/49‑1 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    <  1:2484374/50‑1 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  1:3340097/1‑50 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    <  1:3271629/50‑1 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  1:322734/1‑50 (MQ=255)
           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  1:5402339/1‑49 (MQ=255)
           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGAAt                                   <  1:3071630/50‑1 (MQ=255)
            aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa                                  >  1:3856450/1‑50 (MQ=255)
            aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa                                  >  1:1679448/1‑50 (MQ=255)
             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  1:574170/1‑50 (MQ=255)
             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  1:7966661/1‑50 (MQ=255)
             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  1:580513/1‑50 (MQ=255)
              aTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  1:7611814/1‑49 (MQ=255)
               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                                >  1:798805/1‑49 (MQ=255)
               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                               <  1:2665974/50‑1 (MQ=255)
                aaCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                               >  1:4422225/1‑49 (MQ=255)
                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa                              <  1:1154352/49‑1 (MQ=255)
                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa                              <  1:2221943/49‑1 (MQ=255)
                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:5799322/1‑50 (MQ=255)
                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:699832/1‑50 (MQ=255)
                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:2401946/1‑50 (MQ=255)
                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:2448755/1‑50 (MQ=255)
                  ccATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:1193520/1‑50 (MQ=255)
                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:3977623/1‑48 (MQ=255)
                     tCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                         >  1:5908372/1‑50 (MQ=255)
                     tCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                         >  1:7927243/1‑50 (MQ=255)
                      cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                        >  1:6477616/1‑50 (MQ=255)
                       tGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt                       >  1:2305508/1‑50 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                         <  1:3436792/46‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                     <  1:1212541/50‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                     <  1:6578542/50‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                     <  1:7845988/50‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                     >  1:5835360/1‑50 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt                      <  1:128856/49‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt                       <  1:4256133/48‑1 (MQ=255)
                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    <  1:7766588/50‑1 (MQ=255)
                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    <  1:8033406/50‑1 (MQ=255)
                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    <  1:5278655/50‑1 (MQ=255)
                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                   >  1:3635698/1‑50 (MQ=255)
                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                   >  1:2209871/1‑50 (MQ=255)
                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                   <  1:1055718/50‑1 (MQ=255)
                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                   >  1:2517609/1‑50 (MQ=255)
                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                   >  1:4703384/1‑50 (MQ=255)
                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                   <  1:4612693/50‑1 (MQ=255)
                           cTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCg                   <  1:2705956/50‑1 (MQ=255)
                            tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  1:5693929/1‑50 (MQ=255)
                            tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  1:2645305/1‑50 (MQ=255)
                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCt                 <  1:2806894/49‑1 (MQ=255)
                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa                <  1:7180413/50‑1 (MQ=255)
                               cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               >  1:1234351/1‑50 (MQ=255)
                               cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               >  1:4122150/1‑50 (MQ=255)
                               cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               >  1:2734049/1‑50 (MQ=255)
                               cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               >  1:6427226/1‑50 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTCCg              <  1:1463535/50‑1 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg              >  1:6380940/1‑50 (MQ=255)
                                 ggAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGt             >  1:7201103/1‑50 (MQ=255)
                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt            <  1:7691129/50‑1 (MQ=255)
                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt            >  1:8303472/1‑50 (MQ=255)
                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt            <  1:1108308/50‑1 (MQ=255)
                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt            <  1:5649177/50‑1 (MQ=255)
                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           <  1:7002543/50‑1 (MQ=255)
                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           <  1:4911815/50‑1 (MQ=255)
                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           <  1:5963265/50‑1 (MQ=255)
                                     cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt         >  1:4798900/1‑50 (MQ=255)
                                     cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt         >  1:469063/1‑50 (MQ=255)
                                     cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt         >  1:447340/1‑50 (MQ=255)
                                     cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt         <  1:4130416/50‑1 (MQ=255)
                                      tttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg        >  1:5133067/1‑50 (MQ=255)
                                      tttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg        >  1:6750949/1‑50 (MQ=255)
                                       ttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTgg       >  1:5510469/1‑50 (MQ=255)
                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg        <  1:4324104/48‑1 (MQ=255)
                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc      >  1:2608430/1‑50 (MQ=255)
                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc      >  1:1167357/1‑50 (MQ=255)
                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGccg    >  1:8005865/1‑48 (MQ=255)
                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCt     <  1:2692718/49‑1 (MQ=255)
                                           tGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCg   >  1:180263/1‑50 (MQ=255)
                                            gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt  >  1:5692890/1‑50 (MQ=255)
                                            gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt  >  1:7522304/1‑50 (MQ=255)
                                               |                                              
CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT  >  NC_000913/3090235‑3090328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑