BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	765,191	Δ1 bp	coding (685/723 nt)	mngR ←	DNA‑binding transcriptional repressor MngR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	765,189	0	T	.	100.0%	491.9 / NA	102	coding (687/723 nt)	mngR	DNA‑binding transcriptional repressor MngR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (67/35); total (67/35)

Only 100 of 115 total aligned reads displayed.

GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACC  >  NC_000913/765140‑765234

gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt                                               >  1:5750224/1‑50 (MQ=255)

gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt                                               >  1:6317654/1‑50 (MQ=255)

  cTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:921689/1‑49 (MQ=255)

  cTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:5787088/1‑49 (MQ=255)

  cTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:1843570/1‑49 (MQ=255)

   ttttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:4322317/1‑48 (MQ=255)

   ttttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:6164787/1‑48 (MQ=255)

    tttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:285776/1‑47 (MQ=255)

    tttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:3446987/1‑47 (MQ=255)

    tttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:6211510/1‑47 (MQ=255)

    tttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                             >  1:6523259/1‑47 (MQ=255)

     ttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAttat                                            <  1:4354360/48‑3 (MQ=255)

     ttttGTGCTTATCGCGATGATTTTCGCTGCGCTATAAGGGTAAAttat                                            <  1:2142082/48‑3 (MQ=38)

      tttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                        >  1:2020214/1‑50 (MQ=39)

        tgtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCa                                      >  1:5710957/1‑50 (MQ=39)

         gtgCTTATCGCTATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                     >  1:2820406/1‑50 (MQ=255)

         gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                     >  1:2120367/1‑50 (MQ=39)

         gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                     >  1:4768891/1‑50 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                     <  1:5691388/49‑1 (MQ=38)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                     <  1:6332890/49‑1 (MQ=38)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                    <  1:5259997/50‑1 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                    <  1:5159446/50‑1 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                    <  1:5861656/50‑1 (MQ=39)

           gCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg                                   >  1:6423746/1‑50 (MQ=39)

           gCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg                                   >  1:719397/1‑50 (MQ=39)

           gCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg                                   >  1:7248503/1‑50 (MQ=39)

           gCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg                                   >  1:4677636/1‑50 (MQ=39)

             ttATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg                                  >  1:212971/1‑49 (MQ=38)

              tATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa                                >  1:3916221/1‑50 (MQ=39)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGt                                 <  1:2260206/48‑1 (MQ=38)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGt                                 <  1:3196090/48‑1 (MQ=38)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGt                                 <  1:1913646/48‑1 (MQ=38)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGt                                 <  1:4644680/48‑1 (MQ=38)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa                                <  1:5526633/49‑1 (MQ=38)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               >  1:6178115/1‑50 (MQ=39)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               >  1:2273497/1‑50 (MQ=39)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               >  1:2339315/1‑50 (MQ=39)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt                            <  1:3984574‑M1/50‑2 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             <  1:6110047‑M1/49‑1 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:3053623‑M1/1‑49 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:5492157‑M1/1‑49 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:2532983‑M1/1‑49 (MQ=255)

                   cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta                           <  1:4687210‑M1/50‑3 (MQ=255)

                   cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:5903440‑M1/1‑48 (MQ=255)

                   cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:5154340‑M1/1‑48 (MQ=255)

                   cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:5539013‑M1/1‑48 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:4327046‑M1/1‑47 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:6810311‑M1/1‑47 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:5739465‑M1/1‑47 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:23309‑M1/1‑47 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGCCATCGGTATTAtag                          >  1:4516957‑M1/1‑47 (MQ=255)

                      tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                         >  1:621509‑M1/1‑45 (MQ=255)

                        atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                      >  1:332175‑M1/1‑43 (MQ=255)

                        atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                      <  1:6351939‑M1/50‑8 (MQ=255)

                        atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                      <  1:2365175‑M1/50‑8 (MQ=255)

                         ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                      >  1:4063717‑M1/1‑42 (MQ=255)

                          tttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                     >  1:7003237‑M1/1‑41 (MQ=255)

                           ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca                    <  1:2999510‑M1/49‑10 (MQ=255)

                            tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                   <  1:3453894‑M1/49‑11 (MQ=255)

                            tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                   <  1:4858636‑M1/49‑11 (MQ=255)

                             cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                 >  1:5294649‑M1/1‑38 (MQ=255)

                             cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                  <  1:5852522‑M1/49‑12 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                >  1:2003058‑M1/1‑37 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                >  1:126619‑M1/1‑37 (MQ=255)

                                tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg               >  1:4093386‑M1/1‑35 (MQ=255)

                                tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg               >  1:1709651‑M1/1‑35 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag            <  1:2918868‑M1/50‑18 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag            >  1:5208054‑M1/1‑33 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag            >  1:796636‑M1/1‑33 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag            <  1:3054405‑M1/50‑18 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaa             <  1:3161898‑M1/49‑17 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaa             <  1:274107‑M1/49‑17 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           >  1:5654338‑M1/1‑32 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           <  1:7542576‑M1/50‑19 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           >  1:1254452‑M1/1‑32 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           >  1:7232998‑M1/1‑32 (MQ=255)

                                    cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           >  1:907113‑M1/1‑31 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:5886418‑M1/1‑30 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:807795‑M1/1‑30 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:5818297‑M1/1‑30 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:3705134‑M1/1‑30 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:2787568‑M1/1‑30 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:1113232‑M1/1‑30 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:6629012‑M1/1‑30 (MQ=255)

                                      aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:1181422‑M1/1‑29 (MQ=255)

                                      aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:3289758‑M1/1‑29 (MQ=255)

                                      aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:2220223‑M1/1‑29 (MQ=255)

                                      aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagaca         >  1:5215407‑M1/1‑29 (MQ=255)

                                       tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca       >  1:7533030‑M1/1‑28 (MQ=255)

                                       tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccac        <  1:632179‑M1/49‑22 (MQ=255)

                                       tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         <  1:598760‑M1/48‑21 (MQ=255)

                                        cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca       >  1:7019289‑M1/1‑27 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata     >  1:6749055‑M1/1‑26 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata     >  1:4611714‑M1/1‑26 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata     <  1:2801940‑M1/50‑25 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata     >  1:2081769‑M1/1‑26 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacat      <  1:3602040‑M1/49‑24 (MQ=255)

                                          gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat    >  1:1273191‑M1/1‑25 (MQ=255)

                                            gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  <  1:2396951‑M1/50‑28 (MQ=255)

                                            gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  <  1:3088289‑M1/50‑28 (MQ=255)

GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACC  >  NC_000913/765140‑765234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`