| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 88 [0] | [0] 87 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 87 (0.870) | 59/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819727‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882753‑882800 CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT > 1:1600847/1‑50 AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCATCGCTTT > 1:6018827/1‑50 AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT < 1:942137/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 1:2379024/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 1:2691367/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 1:1397672/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 1:6868939/50‑1 GCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACAGCTTTGA < 1:4479128/50‑1 CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAATGCACCGCTTTG > 1:5276802/1‑48 CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAA < 1:635621/50‑1 CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAA < 1:3876526/50‑1 CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAA < 1:4533406/50‑1 CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAA < 1:5706379/50‑1 CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG > 1:6167051/1‑48 CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG > 1:5733355/1‑48 CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG > 1:4944238/1‑48 GGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG > 1:2178545/1‑50 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC < 1:2478501/50‑1 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC < 1:3402346/50‑1 CAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:6284049/1‑49 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGA < 1:3755896/50‑1 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:5098834/1‑48 AAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG > 1:4587421/1‑50 AACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGC > 1:576290/1‑50 CGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCG < 1:6722930/50‑1 GCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGC > 1:1160342/1‑50 GCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGC > 1:4211248/1‑50 GCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGC > 1:2877890/1‑50 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT < 1:5600323/50‑1 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:2363164/1‑49 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA < 1:905291/50‑1 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA < 1:1536899/50‑1 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCA < 1:4843759/49‑1 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCA < 1:3866099/49‑1 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAAT < 1:4798897/50‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 1:4688292/1‑50 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATA < 1:724183/49‑1 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACT < 1:981996/50‑1 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACT < 1:3572194/50‑1 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 1:5313948/1‑49 TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA < 1:7189040/49‑1 TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 1:4260297/1‑49 TTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA > 1:2599533/1‑50 TTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA > 1:950317/1‑50 TTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA > 1:7156932/1‑50 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC > 1:6015244/1‑50 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC > 1:6051801/1‑50 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC > 1:3266735/1‑50 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA < 1:3060873/49‑1 TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT > 1:5833610/1‑50 TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT > 1:2484419/1‑50 GTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTT > 1:6066289/1‑50 GTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTT > 1:526510/1‑50 GTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT < 1:2436878/49‑1 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT < 1:1161116/50‑1 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT > 1:1318218/1‑50 TAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 1:874148/1‑50 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 1:3668058/1‑49 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 1:6586337/1‑49 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTA < 1:4523555/50‑1 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTT < 1:1232059/49‑1 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 1:2438368/1‑48 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG < 1:6118989/50‑1 CGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGC < 1:6348131/50‑1 CGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:3106091/1‑49 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:5116087/1‑48 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:2760643/1‑48 GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTATACTTTTTAGCAG < 1:846178/50‑1 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAG < 1:976330/50‑1 AAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:3724779/1‑46 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGA < 1:3382371/49‑1 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:3855877/1‑45 GGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATC < 1:635736/50‑1 GCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCA < 1:7147068/50‑1 GCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCA < 1:4181476/50‑1 GCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAT > 1:2013581/1‑48 CACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAG > 1:113001/1‑50 ACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGT > 1:5914069/1‑50 ACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGT > 1:7246806/1‑50 ACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGT < 1:1718149/50‑1 CCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTC < 1:1818170/50‑1 CCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTC < 1:3165778/50‑1 CCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTC < 1:4762923/50‑1 CCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTC < 1:5445108/50‑1 CGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCA > 1:3514437/1‑50 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC > 1:5731041/1‑50 CTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > 1:4069060/1‑50 CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819727‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882753‑882800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |