| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 117 [0] | [0] 121 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 117 (1.200) | 65/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
Only 100 of 117 total aligned reads displayed.
CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627469‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA > NC_000913/1652762‑1652809 CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAA < 1:3248046/50‑1CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAA < 1:2084936/50‑1CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAA < 1:5223310/50‑1 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG < 1:7159732/50‑1 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:6531376/1‑50 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG < 1:1609983/50‑1 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG < 1:5331960/50‑1 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC < 1:2760374/50‑1 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC < 1:7166486/50‑1 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC < 1:3574889/50‑1 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC < 1:4721755/50‑1 CCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:1039219/1‑50 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGC < 1:6774138/50‑1 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:5398727/1‑49 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG < 1:3100543/49‑1 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG < 1:3710786/49‑1 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:717653/1‑49 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCA < 1:4284213/50‑1 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:6144199/1‑48 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:1301600/1‑50 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT > 1:5782534/1‑50 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT < 1:3182160/50‑1 GCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG > 1:1018392/1‑50 GCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG > 1:858109/1‑50 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC > 1:4638284/1‑50 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG < 1:5094306/49‑1 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:1276509/1‑50 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:920396/1‑50 ATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCACAGTGCC > 1:1816627/1‑49 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCA < 1:2032268/50‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCA < 1:671576/50‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCC < 1:2094899/49‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCC < 1:5199049/49‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:6782220/1‑48 GTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAG > 1:235145/1‑50 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:2699005/1‑50 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:5340032/1‑49 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:7036454/1‑49 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:6451974/1‑49 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:3628632/1‑49 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:6888928/1‑49 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:2139539/1‑49 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:1534233/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCC < 1:3826071/49‑1 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT > 1:657120/1‑50 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT < 1:4347185/50‑1 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT > 1:440568/1‑50 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA < 1:7123693/49‑1 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA < 1:5450072/49‑1 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTACCCAGCCA < 1:1053715/49‑1 TGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC > 1:5766770/1‑50 TGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC > 1:5629832/1‑50 TGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC > 1:4630616/1‑50 GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCC > 1:3047635/1‑50 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCC < 1:100615/49‑1 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCC < 1:4538715/49‑1 CACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCAATCCCG < 1:5384931/50‑1 ACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA < 1:2003978/50‑1 CAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATAC > 1:4092207/1‑50 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT < 1:5675823/50‑1 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT > 1:1584273/1‑50 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT < 1:946961/50‑1 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT > 1:135943/1‑50 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT > 1:3413297/1‑50 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT < 1:755389/50‑1 AAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTG > 1:3460552/1‑50 AAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTG < 1:1640286/50‑1 AGCGTTGAGGAACAGTGAGCAGCGCAGTGCCCAGCCATCCCGATACTGCT > 1:876764/1‑50 GCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTG > 1:411934/1‑50 GCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTG < 1:6742427/50‑1 GCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTG < 1:6466522/50‑1 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:3252571/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:1880500/1‑50 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT > 1:2263095/1‑50 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT > 1:5787440/1‑50 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:3318592/1‑50 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:4723989/1‑50 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:4380357/1‑49 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT < 1:6487933/49‑1 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCA > 1:1800790/1‑50 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCA > 1:5687026/1‑50 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCA > 1:2507342/1‑50 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTC < 1:4099264/49‑1 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTC < 1:4160403/49‑1 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC < 1:3162942/50‑1 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC > 1:1495880/1‑50 GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTTCTTTCAC > 1:2574780/1‑49 GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACC < 1:952639/50‑1 AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACC > 1:3780522/1‑49 AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACC > 1:3441060/1‑49 AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACC > 1:218372/1‑49 ACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAA < 1:5365251/50‑1 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT > 1:1745545/1‑50 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC < 1:7549241/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT < 1:5256656/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT < 1:2560475/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT < 1:4829403/49‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA < 1:4880204/50‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA < 1:2754328/50‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT > 1:3299592/1‑48 CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627469‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA > NC_000913/1652762‑1652809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |