| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2066304 | NA (NA) | 94 (0.940) | 61/98 | 0.0 | 100% | noncoding (1050/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2080592 = | 0 (0.000) | intergenic (‑1/+197) | yeeA/sbmC | putative transporter YeeA/DNA gyrase inhibitor | |||||
CAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2066256‑2066304‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGGC > NC_000913/2080592‑2080640 CAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTG > 1:4470685/1‑50CAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTG > 1:1940765/1‑50 AGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGC < 1:3911729/50‑1 AGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTG < 1:1124532/49‑1 GCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTG > 1:7248159/1‑48 CCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTG > 1:2185373/1‑47 CTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAG > 1:6220502/1‑49 TATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGA > 1:3679754/1‑49 TTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAAC < 1:375549/50‑1 TTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAAC < 1:4346922/50‑1 TAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACT < 1:4650584/49‑1 GACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCC < 1:4164853/49‑1 GACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCC < 1:6677834/49‑1 GACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCC < 1:1605240/49‑1 ACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGT < 1:2338556/50‑1 ACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCG > 1:4522512/1‑49 ACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCG > 1:6570198/1‑49 ACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCG > 1:380088/1‑49 CCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTA < 1:6689146/50‑1 CCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTA < 1:5546042/50‑1 CCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGT > 1:1222002/1‑49 CCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGT > 1:5746364/1‑49 CGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAA > 1:2956309/1‑50 GTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAAT > 1:5266627/1‑50 GTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAAT < 1:4425608/50‑1 GTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAAT < 1:696661/50‑1 TTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAAT > 1:1439280/1‑49 TTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAAT > 1:4232238/1‑49 TTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAAT > 1:5134008/1‑48 TTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAAT > 1:3068525/1‑48 TCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGA < 1:6102309/49‑1 TCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGA < 1:3267888/49‑1 TCTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAAT > 1:6967817/1‑47 CTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAG < 1:2706536/49‑1 CTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAG < 1:6592195/49‑1 CTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAG < 1:690697/49‑1 CTTCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAAT > 1:7325855/1‑46 CTTCGCCATTTAAGGCGTTATCCCAAGTTTGCAGAAACTCCGTAATGAG < 1:6153411/49‑1 TCGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGAT > 1:1771026/1‑49 CGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGAT < 1:107926/48‑1 CGCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGAT < 1:6357589/48‑1 CGCCATTTAAGGCGCTATCCCCAGTTTGCAGAAACTCCGTAATGAGATT > 1:6795910/1‑49 GCCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTA < 1:2304793/49‑1 CCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAA < 1:3759778/50‑1 CCATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAA > 1:833075/1‑49 CATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAA < 1:3198993/50‑1 CATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAA > 1:3933193/1‑48 CATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAA > 1:3339216/1‑48 CATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAA > 1:4051445/1‑48 CATTTAAGGCGTTATCCCCAGTTTGCAGAAACTACGTAATGAGATTAA > 1:107527/1‑48 ATTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAG < 1:1287904/50‑1 TTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGC > 1:3281999/1‑50 TTTAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGC < 1:4863951/50‑1 TAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGC > 1:455441/1‑50 TAAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCG < 1:2632043/49‑1 AAGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCT > 1:7411051/1‑50 AGGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCT < 1:3347192/49‑1 GGCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCA < 1:7503297/50‑1 GCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAT < 1:822574/50‑1 GCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAT < 1:2788575/50‑1 GCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCA > 1:966397/1‑49 GCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCA > 1:6329674/1‑49 GCGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCA > 1:50629/1‑49 CGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATA < 1:1451404/50‑1 CGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATA < 1:5541873/50‑1 CGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAT > 1:2951332/1‑49 CGTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAT > 1:282193/1‑49 GTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAA < 1:5922365/50‑1 GTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAA < 1:521815/50‑1 GTTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAA > 1:2988008/1‑50 TTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAAC < 1:853249/50‑1 TTATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAAC > 1:2787803/1‑50 TATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACT > 1:2816408/1‑50 TATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACT > 1:7484983/1‑50 ATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACT > 1:5691994/1‑49 ATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACT > 1:1449696/1‑49 ATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACT < 1:259344/49‑1 ATCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACT < 1:6180152/49‑1 TCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCA > 1:1698157/1‑50 TCCCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTC < 1:5723529/49‑1 CCCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATC < 1:1682456/50‑1 CCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCT > 1:5066161/1‑50 CCAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCT < 1:5322244/50‑1 CAGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTG < 1:6066540/50‑1 AGTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGT > 1:258049/1‑50 GTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTC < 1:6879704/50‑1 GTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTC > 1:7202181/1‑50 GTTTGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTC < 1:5641179/50‑1 TGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGGC > 1:5000075/1‑50 TGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGGC > 1:5698555/1‑50 TGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGGC > 1:5950008/1‑50 TGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGG < 1:5067281/49‑1 TGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGG < 1:1952897/49‑1 TGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGG < 1:362717/49‑1 CAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2066256‑2066304‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGGC > NC_000913/2080592‑2080640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |