| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 132 [0] | [0] 128 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 127 (1.270) | 63/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 127 total aligned reads displayed.
TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > NC_000913/3367643‑3367690 TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 1:6124167/50‑1 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA < 1:4062369/50‑1 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA < 1:2620394/50‑1 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:4727951/1‑50 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA < 1:5515149/50‑1 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:5353076/1‑49 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:315022/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:4584299/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:7461082/48‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:1122079/48‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:640573/48‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:5948922/50‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT > 1:4733042/1‑50 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:7190153/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:1097190/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:1797551/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:737846/1‑50 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:6148229/1‑50 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:1703487/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC > 1:32709/1‑50 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:6351331/50‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC < 1:2744894/50‑1 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:1381058/50‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGG < 1:559162/50‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:4072634/1‑49 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:7401565/1‑49 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA < 1:2224675/50‑1 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:3255181/1‑50 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:168628/1‑50 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGG < 1:6542825/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:5828619/1‑48 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:585907/1‑48 TCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:870630/1‑50 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:1106207/49‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:1415488/49‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:4140676/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:6094042/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:307201/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:4408931/49‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:5674433/50‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:107662/50‑1 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:3127161/1‑49 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:1915939/1‑49 GTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA > 1:1180096/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:1277856/48‑1 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:5264441/1‑49 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:1436525/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:2953431/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:6065389/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:58464/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:3407228/50‑1 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG > 1:6252418/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:3935587/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:6732999/49‑1 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:2158892/49‑1 agAACAGCATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:6105894/47‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:2808009/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:4823786/49‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 1:2200979/50‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:2772317/1‑50 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:551250/1‑50 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 1:3025357/49‑1 AACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT > 1:1922734/1‑50 ACAGCATCAATGAATACTATCAATGCCGGACAGGAGTACTATCAGGCATT < 1:1179557/50‑1 ACAGCATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT > 1:6584575/1‑50 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:3017283/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT > 1:4207019/1‑50 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT > 1:825024/1‑50 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT > 1:7211087/1‑50 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:1834358/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:5200477/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:4502217/49‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:792624/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:6432499/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:1489706/50‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG < 1:2513721/50‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG < 1:6747803/50‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 1:703563/1‑50 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 1:469379/1‑50 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:1621550/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT > 1:6333957/1‑50 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:2519875/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:525784/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:6930353/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:1295598/1‑49 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:4572541/1‑50 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:2465574/1‑50 agTGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA < 1:4470993/47‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:4487200/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA < 1:2244700/49‑1 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGTATTCGTTTTATAC > 1:5461992/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:530787/1‑50 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:4471874/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:689280/50‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:7496299/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:6003556/1‑50 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:3906058/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:7197271/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:4974486/50‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:7155539/49‑1 TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > NC_000913/3367643‑3367690 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |