| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 127 [0] | [0] 126 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 118 (1.210) | 65/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
Only 100 of 127 total aligned reads displayed.
AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888382‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA > NC_000913/3906599‑3906647 AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC < 1:5449114/50‑1AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC < 1:2702955/50‑1AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:6411894/1‑50AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:6578217/1‑50 AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:244783/1‑50 AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:2365242/1‑50 AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:3393931/1‑49 AACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGA > 1:1540/1‑50 AACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGA > 1:7059744/1‑50 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC < 1:3043991/50‑1 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC > 1:6902810/1‑50 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 1:1128401/1‑50 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 1:383271/1‑50 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT < 1:4525484/50‑1 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT < 1:6670763/50‑1 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 1:7121272/1‑50 TCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:6167641/1‑50 TCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:7011470/1‑50 CTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:4635976/1‑49 TGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCA > 1:6408833/1‑50 TGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCA > 1:5733210/1‑50 GAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:2554622/1‑50 GAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:7609001/1‑50 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACC < 1:2533928/50‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:3735462/1‑49 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC < 1:7524153/49‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCA < 1:1525300/48‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCA < 1:783586/48‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTC < 1:3892666/47‑1 GTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCA < 1:4329685/50‑1 GTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:4271488/1‑48 GTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:5059766/1‑48 TGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:2241281/1‑50 AATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT > 1:800121/1‑50 AATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT > 1:7083741/1‑50 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCCCCCGTTTT < 1:6670655/50‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT > 1:4865513/1‑50 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT < 1:860384/50‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT < 1:5860130/50‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT < 1:1849444/49‑1 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC > 1:3219010/1‑50 AATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCT > 1:412821/1‑50 AATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCT > 1:5358959/1‑50 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTC < 1:868222/50‑1 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCT < 1:6962568/49‑1 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGACGACTTCACCAGTATTCT < 1:310972/49‑1 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT < 1:3633069/50‑1 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG > 1:3926246/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG < 1:2329606/50‑1 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG > 1:2572882/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG < 1:6318112/50‑1 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG > 1:4063196/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG < 1:1230008/49‑1 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG < 1:5800476/49‑1 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTT < 1:3607416/50‑1 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTT < 1:1014495/50‑1 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA < 1:5956763/50‑1 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA < 1:706363/50‑1 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT > 1:6926741/1‑50 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT > 1:2769320/1‑50 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT < 1:4202116/50‑1 TCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATG > 1:2750446/1‑50 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTC < 1:4393721/50‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTC < 1:5204670/50‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 1:3964326/49‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 1:756394/49‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 1:5394688/49‑1 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCA < 1:5650589/50‑1 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGG < 1:6102474/50‑1 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG < 1:4094749/49‑1 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTT < 1:6933467/48‑1 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTG > 1:7374240/1‑50 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTG < 1:3943830/50‑1 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTT < 1:2038918/49‑1 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC < 1:5491926/50‑1 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT < 1:7270786/50‑1 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT < 1:1471812/50‑1 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT > 1:5542643/1‑50 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT < 1:6513064/50‑1 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT < 1:3286032/50‑1 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT < 1:5440735/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:4893691/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:7182942/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG > 1:2965589/1‑50 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC > 1:2188086/1‑50 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC > 1:586914/1‑50 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCG < 1:1964322/50‑1 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCG < 1:872451/50‑1 AAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCG > 1:6441000/1‑49 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAA < 1:4544534/50‑1 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAA > 1:1733441/1‑50 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG < 1:895707/50‑1 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG > 1:1565954/1‑50 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG < 1:1676636/50‑1 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG > 1:5715958/1‑50 GCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG > 1:1889706/1‑49 CCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA < 1:1387788/50‑1 CCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA < 1:2123659/50‑1 CCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGC < 1:618699/49‑1 CCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG > 1:7298582/1‑48 AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888382‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA > NC_000913/3906599‑3906647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |