| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 89 [0] | [0] 88 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 86 (0.880) | 49/96 | 0.1 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15339‑15435 | tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGACACTC > 1:165137‑M1/1‑50 (MQ=255)tAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC < 1:3770546‑M1/50‑1 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCta > 1:3155070‑M1/1‑48 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCta < 1:6096291‑M1/50‑3 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCta < 1:2114770‑M1/50‑3 (MQ=255) gTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAGTACTCtacc > 1:5291747‑M1/1‑46 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctc > 1:3475041‑M1/1‑43 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCtacctc > 1:2300877‑M1/1‑43 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGACACTCtacctc > 1:2035103‑M1/1‑43 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctca < 1:5990440‑M1/50‑8 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctc < 1:3741173‑M1/49‑7 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTGACTCcacctcga > 1:2146577‑M1/1‑42 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctcca > 1:2606985‑M1/1‑42 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctcaat > 1:590049‑M1/1‑41 (MQ=255) tGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctcaatg > 1:1153233‑M1/1‑40 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatg < 1:6577674‑M1/49‑11 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatg < 1:5662523‑M1/49‑11 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctccatgtg > 1:3771054‑M1/1‑38 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtg < 1:29126‑M1/50‑13 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgt < 1:55773‑M1/49‑12 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGAATACACcacctcaatgtg > 1:6502146‑M1/1‑38 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtaccccaatgtg > 1:969329‑M1/1‑37 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgt < 1:5360638‑M1/50‑14 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCttcctcaatgtgta < 1:1830948‑M1/50‑15 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGGTCACCCtacctccatgtgtat > 1:2410436‑M1/1‑35 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGGTCACCCtaccccaatgtgtat > 1:3262715‑M1/1‑35 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat > 1:2704953‑M1/1‑35 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctcaatttgtat > 1:2174745‑M1/1‑34 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatc < 1:4276647‑M1/50‑17 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatc < 1:2174092‑M1/50‑17 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat > 1:6149708‑M1/1‑34 (MQ=255) atGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctccatgtgtatta > 1:400207‑M1/1‑33 (MQ=255) atGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctccatgtgtatca > 1:6044006‑M1/1‑33 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGGGCACTCtacctcaatgtgtatcacaa > 1:3716853‑M1/1‑30 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaa < 1:2743888‑M1/50‑21 (MQ=255) aCCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatcc < 1:3034386‑M1/50‑26 (MQ=255) aCCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatcc < 1:6582788‑M1/50‑26 (MQ=255) aCCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatcc < 1:5959561‑M1/50‑26 (MQ=255) cTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccat < 1:5424556‑M1/50‑28 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatatt < 1:3778629‑M1/50‑31 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatat < 1:4089873‑M1/49‑30 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 1:1870782‑M1/48‑29 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 1:675808‑M1/48‑29 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 1:7483445‑M1/48‑29 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattct < 1:3829065‑M1/50‑33 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattct < 1:917917‑M1/50‑33 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattct > 1:2980863‑M1/1‑18 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattct < 1:5113179‑M1/50‑33 (MQ=255) aGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctt < 1:914805‑M1/50‑34 (MQ=255) gTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattcttt < 1:1031722‑M1/50‑35 (MQ=255) gTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattcttt < 1:680620‑M1/50‑35 (MQ=255) gTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattcttt < 1:7126930‑M1/50‑35 (MQ=255) gTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattcttt < 1:2104361‑M1/50‑35 (MQ=255) tGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttg < 1:1809140‑M1/50‑36 (MQ=255) ggCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt > 1:6266510‑M1/1‑14 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtg > 1:5693086‑M1/1‑13 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt < 1:5140490‑M1/49‑37 (MQ=255) cGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtgg < 1:2580652‑M1/50‑39 (MQ=255) cGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtgg < 1:3946418‑M1/50‑39 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:3063639‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg < 1:5386537‑M1/50‑40 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:6900447‑M1/1‑11 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:2734641‑M1/1‑10 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg < 1:6019532‑M1/50‑41 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:4162557‑M1/1‑10 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg < 1:4436352‑M1/50‑41 (MQ=255) gggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg < 1:464180‑M1/50‑41 (MQ=255) ggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggggg < 1:5168315‑M1/50‑42 (MQ=255) ggATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:3644937‑M1/1‑9 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtggggga < 1:2386317‑M1/50‑43 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtggggga < 1:6419504‑M1/50‑43 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:4146390‑M1/1‑8 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:7497309‑M1/1‑8 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:4345511‑M1/1‑8 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:395700‑M1/1‑8 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:197521‑M1/1‑8 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:105176‑M1/1‑8 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt < 1:5166195‑M1/50‑45 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt > 1:5038754‑M1/1‑6 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt < 1:4301732‑M1/50‑45 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtct < 1:1737067‑M1/50‑47 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc < 1:370415‑M1/49‑46 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc < 1:2634788‑M1/49‑46 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:6457756‑M1/1‑3 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:776146‑M1/1‑3 (MQ=255) ctctacctcaatgtgtatcacaatatccatattctttgtgggggaatctg > 1:678551‑M1/1‑3 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:6136269‑M1/1‑2 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:4169675‑M1/1‑2 (MQ=255) ctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:2047445‑M1/1‑1 (MQ=255) | TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15339‑15435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |