Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 100 [0] | [0] 99 | [dgcJ] | [dgcJ] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1872029 | 0 (0.000) | 97 (0.990) | 56/96 | 0.0 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ |
AGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGTGCCATTTATCATGAAATTGCACCATAGAATGCTCCGGCATTTTATCG > NC_000913/1871980‑1872077 | aGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG < 1:991594‑M1/50‑1 (MQ=255) aGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG < 1:6609457‑M1/50‑1 (MQ=255) gCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGat < 1:5178224‑M1/50‑3 (MQ=255) ccGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatg < 1:5007406‑M1/50‑4 (MQ=255) cGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgc < 1:6278950‑M1/50‑5 (MQ=255) aaTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 1:249205‑M1/1‑43 (MQ=255) aaTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 1:7182134‑M1/1‑43 (MQ=255) aaTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 1:3126456‑M1/1‑43 (MQ=255) aTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtat < 1:3550643‑M1/50‑9 (MQ=255) aTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtat < 1:4287110‑M1/50‑9 (MQ=255) aTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtat < 1:4424348‑M1/50‑9 (MQ=255) aTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 1:1273447‑M1/1‑42 (MQ=255) aTCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgta > 1:2397274‑M1/1‑42 (MQ=255) cGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtata > 1:942116‑M1/1‑40 (MQ=255) gAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataa < 1:1049340‑M1/49‑11 (MQ=255) gAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataa < 1:4929164‑M1/49‑11 (MQ=255) gAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataa < 1:6626176‑M1/49‑11 (MQ=255) aaCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag > 1:3563329‑M1/1‑38 (MQ=255) aaCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag > 1:5093115‑M1/1‑38 (MQ=255) aaCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag > 1:2593104‑M1/1‑38 (MQ=255) aaCTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaag < 1:1541907‑M1/50‑13 (MQ=255) cTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagct > 1:1169462‑M1/1‑36 (MQ=255) tttATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagctt > 1:410007‑M1/1‑35 (MQ=255) tttATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagctt > 1:6708390‑M1/1‑35 (MQ=255) ttATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttc > 1:6947647‑M1/1‑34 (MQ=255) tATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttc < 1:5486490‑M1/49‑17 (MQ=255) tATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttc < 1:480687‑M1/49‑17 (MQ=255) tATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttc < 1:299776‑M1/49‑17 (MQ=255) tATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttc < 1:1365779‑M1/49‑17 (MQ=255) tATCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttc < 1:1984157‑M1/49‑17 (MQ=255) aTCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttcc < 1:558249‑M1/49‑18 (MQ=255) aTCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttcc < 1:4144392‑M1/49‑18 (MQ=255) tCTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccg < 1:4718591‑M1/49‑19 (MQ=255) cTGGTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgat > 1:49057‑M1/1‑30 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatga < 1:894779‑M1/49‑23 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatga < 1:2195767‑M1/49‑23 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatg < 1:2969730‑M1/48‑22 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatg < 1:6000854‑M1/48‑22 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgat < 1:3817565‑M1/47‑21 (MQ=255) gTTTTCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccga < 1:7155123‑M1/46‑20 (MQ=255) ttttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagc < 1:3396829‑M1/50‑25 (MQ=255) tttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcg > 1:3009939‑M1/1‑25 (MQ=255) tttCTCGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcg > 1:684971‑M1/1‑25 (MQ=255) tctcGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtt > 1:2735714‑M1/1‑23 (MQ=255) ctcGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtt < 1:6303600‑M1/49‑28 (MQ=255) ctcGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtt > 1:2621470‑M1/1‑22 (MQ=255) ctcGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtt < 1:4703445‑M1/49‑28 (MQ=255) ctcGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtt > 1:7268801‑M1/1‑22 (MQ=255) ctcGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtt < 1:3875276‑M1/49‑28 (MQ=255) cGTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgttta > 1:1836341‑M1/1‑20 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttata < 1:3222071‑M1/50‑32 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttata > 1:6933371‑M1/1‑19 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttata < 1:3215658‑M1/50‑32 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttata < 1:1878401‑M1/50‑32 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttata < 1:5791099‑M1/50‑32 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttat < 1:1817603‑M1/49‑31 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgttt < 1:5577952‑M1/47‑29 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgttt < 1:6342631‑M1/47‑29 (MQ=255) gTTTCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgttt < 1:3535900‑M1/47‑29 (MQ=255) tttCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatat > 1:7607786‑M1/1‑18 (MQ=255) ttCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatg > 1:5104641‑M1/1‑17 (MQ=255) ttCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatg > 1:2145948‑M1/1‑17 (MQ=255) ttCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatg > 1:1297239‑M1/1‑17 (MQ=255) tCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgt > 1:1563299‑M1/1‑16 (MQ=255) tCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgt > 1:7579047‑M1/1‑16 (MQ=255) tCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatg < 1:5238223‑M1/49‑34 (MQ=255) tCACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatg < 1:4570225‑M1/49‑34 (MQ=255) cACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgt > 1:5427029‑M1/1‑15 (MQ=255) cACTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgt < 1:6405675‑M1/49‑35 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtca < 1:2013652‑M1/50‑37 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtca < 1:6875084‑M1/50‑37 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtc > 1:3244650‑M1/1‑14 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtc > 1:1617653‑M1/1‑14 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtc < 1:5558821‑M1/49‑36 (MQ=255) aCTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtc < 1:6752318‑M1/49‑36 (MQ=255) cTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaa < 1:2338742‑M1/50‑38 (MQ=255) cTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaa > 1:5083397‑M1/1‑13 (MQ=255) cTAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaa > 1:4192075‑M1/1‑13 (MQ=255) tAACCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaa > 1:7432479‑M1/1‑12 (MQ=255) aaCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaat > 1:780349‑M1/1‑11 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaata < 1:2347462‑M1/49‑40 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaat < 1:2792273‑M1/48‑39 (MQ=255) aCCGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaat > 1:6943371‑M1/1‑10 (MQ=255) ccGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataag < 1:6810925‑M1/50‑42 (MQ=255) ccGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataag < 1:6478098‑M1/50‑42 (MQ=255) ccGAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataag < 1:870354‑M1/50‑42 (MQ=255) gAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagca < 1:2731390‑M1/50‑44 (MQ=255) gAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataag > 1:2550698‑M1/1‑7 (MQ=255) gAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataag > 1:6052463‑M1/1‑7 (MQ=255) gAAGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataag > 1:5646970‑M1/1‑7 (MQ=255) aaGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataagcag < 1:4765534‑M1/50‑45 (MQ=255) aaGGAGatgcgtataaagcttccgatgagcgtttatatgtcaataag > 1:3708644‑M1/1‑6 (MQ=255) gagatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaac < 1:1881358‑M1/50‑48 (MQ=255) gagatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaac < 1:5323835‑M1/50‑48 (MQ=255) gagatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaa > 1:3369039‑M1/1‑3 (MQ=255) agatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaaca < 1:2189287‑M1/50‑49 (MQ=255) agatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaaca < 1:5085086‑M1/50‑49 (MQ=255) agatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaaca < 1:7115214‑M1/50‑49 (MQ=255) agatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaac > 1:1496301‑M1/1‑2 (MQ=255) gatgcgtataaagcttccgatgagcgtttatatgtcaataagcagaaca > 1:5991315‑M1/1‑1 (MQ=255) | AGGCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGTGCCATTTATCATGAAATTGCACCATAGAATGCTCCGGCATTTTATCG > NC_000913/1871980‑1872077 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |