| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 120 [0] | [0] 120 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 115 (1.230) | 57/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
Only 100 of 120 total aligned reads displayed.
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453878‑3453976 | gggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:5895327‑M1/1‑50 (MQ=255) gTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta < 1:2834142‑M1/50‑3 (MQ=255) tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat < 1:4824928‑M1/50‑4 (MQ=255) tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:7278478‑M1/1‑47 (MQ=255) tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:4030661‑M1/1‑47 (MQ=255) gACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat > 1:1259756‑M1/1‑46 (MQ=255) gACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat > 1:1465212‑M1/1‑46 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa < 1:4594843‑M1/50‑6 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa > 1:2530270‑M1/1‑45 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa > 1:5018497‑M1/1‑45 (MQ=255) tGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataatcc > 1:4177537‑M1/1‑42 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccct < 1:1813616‑M1/50‑11 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccct < 1:6437829‑M1/50‑11 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccc < 1:6738790‑M1/49‑10 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatcc < 1:675194‑M1/48‑9 (MQ=255) ttctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt > 1:673270‑M1/1‑39 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt < 1:3148296‑M1/49‑12 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt < 1:3500977‑M1/49‑12 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:5685262‑M1/1‑37 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:696406‑M1/1‑37 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttg < 1:1220176‑M1/49‑13 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttg < 1:3339899‑M1/49‑13 (MQ=255) tttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:4294086‑M1/1‑36 (MQ=255) tttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:369935‑M1/1‑36 (MQ=255) ttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga > 1:7081115‑M1/1‑35 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga < 1:2154827‑M1/49‑16 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga < 1:4827023‑M1/49‑16 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtg < 1:1051539‑M1/48‑15 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt < 1:3672183‑M1/47‑14 (MQ=255) tGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacg > 1:7585018‑M1/1‑32 (MQ=255) tGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacg > 1:675278‑M1/1‑32 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaa < 1:6153677‑M1/50‑21 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgta > 1:6160687‑M1/1‑30 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa < 1:1821103‑M1/50‑24 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaa < 1:6213318‑M1/49‑23 (MQ=255) cgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 1:3091494‑M1/1‑24 (MQ=255) cgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 1:107747‑M1/1‑24 (MQ=255) cgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg < 1:1958216‑M1/50‑27 (MQ=255) cgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 1:2379965‑M1/1‑24 (MQ=255) cgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 1:2412971‑M1/1‑24 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaa < 1:6907673‑M1/50‑30 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaa < 1:3357791‑M1/50‑31 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaa < 1:4790817‑M1/50‑31 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:2408672‑M1/1‑19 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa < 1:275141‑M1/50‑32 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa < 1:2269452‑M1/50‑32 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:1442476‑M1/1‑19 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:4180419‑M1/1‑19 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa < 1:344141‑M1/50‑32 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:4411670‑M1/1‑19 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:3081802‑M1/1‑18 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:6732098‑M1/1‑18 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:1696094‑M1/1‑18 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:4593466‑M1/1‑18 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaaca < 1:5368528‑M1/50‑34 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac > 1:1766620‑M1/1‑17 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac > 1:1998734‑M1/1‑17 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac > 1:5495272‑M1/1‑17 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac > 1:605380‑M1/1‑17 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac > 1:3462467‑M1/1‑17 (MQ=255) tataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaaca > 1:4572439‑M1/1‑16 (MQ=255) tataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaaca > 1:6938894‑M1/1‑16 (MQ=255) tataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaaca > 1:4977539‑M1/1‑16 (MQ=255) tataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaaca > 1:5768964‑M1/1‑16 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:1554658‑M1/1‑15 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:6880415‑M1/1‑15 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag > 1:1913585‑M1/1‑13 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag > 1:2270405‑M1/1‑13 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagt < 1:5711441‑M1/50‑39 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagt < 1:4137130‑M1/50‑39 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagt < 1:2204124‑M1/50‑39 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagt > 1:3526104‑M1/1‑12 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag < 1:644336‑M1/49‑38 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtc < 1:827166‑M1/50‑40 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtc < 1:4199771‑M1/50‑40 (MQ=255) aatcaAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc < 1:7370813‑M1/48‑41 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc > 1:2521100‑M1/1‑10 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc < 1:5354966‑M1/50‑41 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:100931‑M1/50‑42 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:6441046‑M1/50‑42 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:1818583‑M1/50‑42 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:3136145‑M1/50‑42 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc > 1:2729415‑M1/1‑9 (MQ=255) tCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta > 1:5867950‑M1/1‑8 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:484423‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:5945813‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:5541898‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:7373908‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:7423482‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:775690‑M1/49‑43 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:1027367‑M1/49‑43 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg < 1:3267072‑M1/50‑45 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:6952642‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:651219‑M1/49‑44 (MQ=255) aaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:7328119‑M1/1‑5 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:3365724‑M1/1‑4 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag < 1:6257896‑M1/50‑48 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagga < 1:7588774‑M1/50‑50 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagga < 1:1085112‑M1/50‑50 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg > 1:3646665‑M1/1‑1 (MQ=255) | GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453878‑3453976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |