| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 612,648 | G→T | intergenic (‑154/‑89) | fepA ← / → fes | ferric enterobactin outer membrane transporter/enterochelin esterase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 612,648 | 0 | G | T | 92.6% | 317.5 / 19.5 | 95 | intergenic (‑154/‑89) | fepA/fes | ferric enterobactin outer membrane transporter/enterochelin esterase |
| Reads supporting (aligned to +/- strand): ref base G (3/4); new base T (25/63); total (28/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 | |||||||||||
GTGCAGTTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACGCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATATTTCT > NC_000913/612601‑612695 | gtgcagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTActct < 1:4791676/50‑1 (MQ=255)gtgcagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTActct < 1:7365902/50‑1 (MQ=255)gtgcagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACgat < 1:3719240/50‑3 (MQ=255) tgcagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTa < 1:6614518/50‑1 (MQ=255) tgcagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTa < 1:2366257/50‑1 (MQ=255) tgcagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACGCTa < 1:6981175/50‑1 (MQ=255) gcagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTAt > 1:6276871/1‑50 (MQ=255) cagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTAtt > 1:6418461/1‑50 (MQ=255) cagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTAtt < 1:612862/50‑1 (MQ=255) cagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTAtt < 1:1994034/50‑1 (MQ=255) cagtTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTAtt < 1:1721919/50‑1 (MQ=255) ttGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgca < 1:4677055/50‑1 (MQ=255) ttGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgca < 1:3814326/50‑1 (MQ=255) ggTTAATTAATGTCCGGGCTTCCCACGGCGCGCCATTACTCTATtgcaa < 1:333100/49‑1 (MQ=255) ggTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaa > 1:7564575/1‑50 (MQ=255) ggTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaa < 1:7572134/49‑1 (MQ=255) ggTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaa < 1:625638/49‑1 (MQ=255) ggTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaa < 1:1344830/49‑1 (MQ=255) gTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaat < 1:2491567/50‑1 (MQ=255) gTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaat < 1:4592785/50‑1 (MQ=255) gTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaa < 1:827031/49‑1 (MQ=255) gTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaa < 1:7334293/49‑1 (MQ=255) ttaattaaTGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatg > 1:5959615/1‑50 (MQ=255) aattaatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgc > 1:3444349/1‑49 (MQ=255) attaatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgcaa < 1:7203905/50‑1 (MQ=255) attaatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgcaa < 1:5461775/50‑1 (MQ=255) attaatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgca < 1:4192406/49‑1 (MQ=255) attaatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgca < 1:1137152/49‑1 (MQ=255) attaatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgca > 1:952653/1‑49 (MQ=255) ttaatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgcaaa < 1:138946/50‑1 (MQ=255) taatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgcaaa > 1:4979408/1‑49 (MQ=255) taatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgcaaa > 1:1795565/1‑49 (MQ=255) aatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATtgcaaatgcaaa > 1:6357474/1‑48 (MQ=255) aatGTCCGCGCTTCCCACGGCGCGCCATTACTCTATTgcaaatgcaaat < 1:1469767/49‑1 (MQ=255) atGTCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATa < 1:1428899/49‑1 (MQ=255) tGTCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGt < 1:847182/50‑1 (MQ=255) tCCGCGCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGtt < 1:6726440/49‑1 (MQ=255) tCCGCGCTTCCCACGGCGCGCCATTACGATATTGCAAATGCAAATAGtt < 1:2984836/49‑1 (MQ=255) cgcgCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTAt < 1:623862/49‑1 (MQ=255) cgcgCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTAt < 1:3242020/49‑1 (MQ=255) cgcgCTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTAt < 1:996873/49‑1 (MQ=255) cgcTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaa < 1:1421841/50‑1 (MQ=255) cgcTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaa < 1:7186708/50‑1 (MQ=255) cgcTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaa > 1:866068/1‑50 (MQ=255) gcTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaat < 1:2756102/50‑1 (MQ=255) gcTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGCTATCaa > 1:643549/1‑49 (MQ=39) cTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaata < 1:1117650/50‑1 (MQ=255) cTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaat > 1:4179058/1‑49 (MQ=255) cTTCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaat > 1:67029/1‑49 (MQ=255) cTTCCCACGGCGCGCCATTACGATATTGCAAATGCAAATAGTTATCaat > 1:4069347/1‑49 (MQ=255) ttCCCACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCaataa > 1:3729188/1‑50 (MQ=255) ccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAataata < 1:3141831/49‑1 (MQ=255) ccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAataata < 1:5950237/49‑1 (MQ=255) ccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAataata < 1:5942136/49‑1 (MQ=255) ccACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAatat < 1:6913194/50‑1 (MQ=255) cACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAatat > 1:7222955/1‑49 (MQ=255) cACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtatt < 1:1859218/50‑1 (MQ=255) cACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtatt < 1:6451259/50‑1 (MQ=255) cACGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtatt < 1:5085471/50‑1 (MQ=255) aCGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtatta < 1:2125801/50‑1 (MQ=255) aCGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtatta < 1:1655972/50‑1 (MQ=255) aCGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtatta < 1:1224606/50‑1 (MQ=255) aCGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtatta < 1:278407/50‑1 (MQ=255) cGGCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAAtattat < 1:6114760/50‑1 (MQ=255) ggCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATc < 1:3746693/50‑1 (MQ=255) ggCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATc < 1:7374720/50‑1 (MQ=255) ggCGCGCCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATc < 1:1050163/50‑1 (MQ=255) gcgcgcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCa < 1:2162763/50‑1 (MQ=255) gcgcgcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCa < 1:3617045/50‑1 (MQ=255) gcgcgcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCa < 1:1549950/50‑1 (MQ=255) gcgcgcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCa < 1:4365878/50‑1 (MQ=255) gcgcgcCATTACGATATTGCAAATGCAAATAGTTATCAATAATATTATCa < 1:4135758/50‑1 (MQ=255) cgcgcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCaa > 1:490839/1‑50 (MQ=255) gcgcCATTACTCTATTGCAAATGCAAATAGTTATCAATAGTATTATCAat < 1:7397775/50‑1 (MQ=39) gcgcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCaa > 1:3291686/1‑49 (MQ=255) gcgcCATTACGCTATTGCAAATGCAAATAGTTATCAATAATATTATCaa > 1:2785465/1‑49 (MQ=255) cgcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAata < 1:6448714/50‑1 (MQ=255) cgcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAata < 1:3678326/50‑1 (MQ=255) gcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatat < 1:2960498/50‑1 (MQ=255) gcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatat < 1:2533036/50‑1 (MQ=255) gcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatat < 1:6035965/50‑1 (MQ=255) gcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAata > 1:227229/1‑49 (MQ=255) gcCATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAata > 1:3987046/1‑49 (MQ=255) gcCATTACGCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatat < 1:6775534/50‑1 (MQ=255) ccATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatata < 1:1375336/50‑1 (MQ=255) ccATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatata > 1:4416425/1‑50 (MQ=255) cATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatatat < 1:157872/50‑1 (MQ=255) cATTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAatatat < 1:146067/50‑1 (MQ=255) aTTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAGTATAtt < 1:5716827/50‑1 (MQ=38) aTTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATAtt > 1:895473/1‑50 (MQ=255) aTTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATAtt < 1:2713015/50‑1 (MQ=255) aTTACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATAtt < 1:3199041/50‑1 (MQ=255) ttACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATAttt > 1:4261458/1‑50 (MQ=255) ttACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATAttt < 1:6079596/50‑1 (MQ=255) ttACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATAttt > 1:6209807/1‑50 (MQ=255) tACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATATTTc > 1:7301934/1‑50 (MQ=255) tACTCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATATTTc > 1:2611416/1‑50 (MQ=255) aCGATATTGCAAATGCAAATAGTTATCAATAATATTATCAATATATTTCt > 1:4054046/1‑50 (MQ=255) | GTGCAGTTGGTTAATTAATGTCCGCGCTTCCCACGGCGCGCCATTACGCTATTGCAAATGCAAATAGTTATCAATAATATTATCAATATATTTCT > NC_000913/612601‑612695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |