| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,761,556 | A→C | L79* (TTA→TGA) | sufD ← | Fe‑S cluster scaffold complex subunit SufD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,761,556 | 0 | A | C | 81.8% | 245.6 / 38.7 | 77 | L79* (TTA→TGA) | sufD | Fe‑S cluster scaffold complex subunit SufD |
| Reads supporting (aligned to +/- strand): ref base A (10/4); new base C (33/30); total (43/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.23e-01 | |||||||||||
GCACGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATGC > NC_000913/1761509‑1761601 | gCACGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCAc > 1:1073438/1‑50 (MQ=255)gCACGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCAc < 1:4100563/50‑1 (MQ=255)gCACGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCAc > 1:2266621/1‑50 (MQ=255) cACGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACg < 1:3256621/50‑1 (MQ=255) cACGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACg > 1:7205707/1‑50 (MQ=255) aCGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGc < 1:746885/50‑1 (MQ=255) aCGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGc > 1:5247155/1‑50 (MQ=255) cGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGc > 1:303897/1‑49 (MQ=255) gTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCt > 1:2005687/1‑49 (MQ=255) tAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCt > 1:6777830/1‑48 (MQ=255) aaCGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAg > 1:4402556/1‑50 (MQ=255) aaCGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAg > 1:3634782/1‑50 (MQ=255) aCGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAgg < 1:3436997/50‑1 (MQ=255) aCGCCCATCCACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAg < 1:2327926/49‑1 (MQ=39) cGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAgg > 1:3118957/1‑49 (MQ=255) cGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGc < 1:4700876/50‑1 (MQ=255) gCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCa > 1:1491717/1‑50 (MQ=255) gCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTAACTCTAAGGCa > 1:4682845/1‑50 (MQ=255) gCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCa < 1:6254145/50‑1 (MQ=255) gCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCa > 1:3190428/1‑50 (MQ=255) ccATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATc < 1:5459034/50‑1 (MQ=255) ccATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATc < 1:2304826/50‑1 (MQ=255) cATCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCa > 1:3234266/1‑50 (MQ=255) tCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACg > 1:6742575/1‑50 (MQ=255) tCGACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACg < 1:154392/50‑1 (MQ=255) tCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCACg > 1:7553387/1‑50 (MQ=255) cGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCACgc > 1:4628831/1‑50 (MQ=255) gACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgct > 1:3993358/1‑50 (MQ=255) gACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgct > 1:4388150/1‑50 (MQ=255) gACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgct > 1:6082183/1‑50 (MQ=255) gACAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgc < 1:249703/49‑1 (MQ=255) gACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCACgct < 1:4293148/50‑1 (MQ=255) aCAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgctg > 1:4736816/1‑50 (MQ=255) aCAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgctg > 1:4867007/1‑50 (MQ=255) cAAACACCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACgctgc < 1:3109392/50‑1 (MQ=255) cacCAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCtgtg > 1:6887855/1‑50 (MQ=255) cacCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCACGCTGCtgtg > 1:1673206/1‑50 (MQ=255) ccAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTggg > 1:4850451/1‑50 (MQ=255) cAGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTggg > 1:7121844/1‑49 (MQ=255) cAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCACGCTGCTGTggg > 1:5504850/1‑49 (MQ=255) aGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGa < 1:1898060/50‑1 (MQ=255) aGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGa > 1:7580741/1‑50 (MQ=255) aGCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGa > 1:7194499/1‑50 (MQ=255) gCCGCACGGAGTCTAACGTTCACGCTAGGGCATCACGCTGCTGTGGGGat < 1:3431402/50‑1 (MQ=255) gCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGat < 1:2892817/50‑1 (MQ=255) gCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGat < 1:6212764/50‑1 (MQ=255) gCCGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGat < 1:2071521/50‑1 (MQ=255) ccGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGata < 1:4099344/50‑1 (MQ=255) cGCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGatat > 1:4438288/1‑50 (MQ=255) gCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtc > 1:1553415/1‑50 (MQ=255) gCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtc > 1:2897103/1‑50 (MQ=255) gCACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtc < 1:5314328/50‑1 (MQ=255) cACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtct > 1:4417041/1‑50 (MQ=255) cACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtct > 1:6781650/1‑50 (MQ=255) cACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtct < 1:5448840/50‑1 (MQ=255) cACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtct > 1:4918322/1‑50 (MQ=255) cACGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtct < 1:4228006/50‑1 (MQ=255) aCGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtctc < 1:2028644/50‑1 (MQ=255) aCGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtctc < 1:6745504/50‑1 (MQ=255) cGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtctct > 1:7200965/1‑50 (MQ=255) cGGAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtctct < 1:7045363/50‑1 (MQ=255) cGGAGTCTAACGTTAACGCTAAGGCATCACGCTGCTGTGGGGATAtctct > 1:6080691/1‑50 (MQ=255) ggAGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATAtctctc < 1:2191281/50‑1 (MQ=255) aGTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTccc < 1:4831471/50‑1 (MQ=255) aGTCTAACGTTAACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTccc < 1:7560893/50‑1 (MQ=255) gTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCg < 1:1214781/50‑1 (MQ=255) gTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCg > 1:3536656/1‑50 (MQ=255) gTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCg < 1:2657051/50‑1 (MQ=255) gTCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCg < 1:2019329/50‑1 (MQ=255) tCTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCg > 1:5752440/1‑49 (MQ=255) cTAACGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGc > 1:724089/1‑49 (MQ=255) tAACGTTAACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCaa > 1:7395120/1‑50 (MQ=255) aCGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCaa < 1:3978625/48‑1 (MQ=255) aCGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAAt < 1:7601290/49‑1 (MQ=255) aCGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATg < 1:5295923/50‑1 (MQ=255) aCGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATg > 1:7544182/1‑50 (MQ=255) cGTTCACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATGc > 1:5698459/1‑50 (MQ=255) | GCACGTAACGCCCATCGACAAACACCAGCCGCACGGAGTCTAACGTTAACGCTAAGGCATCACGCTGCTGTGGGGATATCTCTCCCGCAATGC > NC_000913/1761509‑1761601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |