BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,093,223	A→G	V72V (GTT→GTC)	rhaM ←	L‑rhamnose mutarotase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,093,223	0	A	G	100.0%	448.9 / NA	109	V72V (GTT→GTC)	rhaM	L‑rhamnose mutarotase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (44/65); total (44/65)

Only 100 of 109 total aligned reads displayed.

GGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATCT  >  NC_000913/4093176‑4093269

gggTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGAc                                              <  1:2953267/50‑1 (MQ=255)

 ggTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACa                                             >  1:4756589/1‑50 (MQ=255)

  gTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt                                            <  1:2355946/50‑1 (MQ=255)

  gTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt                                            >  1:6282458/1‑50 (MQ=255)

  gTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt                                            >  1:4963590/1‑50 (MQ=255)

  gTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt                                            >  1:1689839/1‑50 (MQ=255)

   ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt                                            >  1:1251916/1‑49 (MQ=255)

   ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt                                            >  1:4952158/1‑49 (MQ=255)

   ttAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATc                                           <  1:3337262/50‑1 (MQ=255)

    tAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACAt                                            >  1:3460772/1‑48 (MQ=255)

     aGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCa                                          <  1:7589911/49‑1 (MQ=255)

     aGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAg                                         >  1:929275/1‑50 (MQ=255)

      gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAg                                         <  1:3260460/49‑1 (MQ=255)

      gCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGt                                        <  1:4332070/50‑1 (MQ=255)

       cGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTg                                       <  1:41385/50‑1 (MQ=255)

       cGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTg                                       <  1:5174016/50‑1 (MQ=255)

       cGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTg                                       >  1:4479621/1‑50 (MQ=255)

       cGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTg                                       >  1:7401387/1‑50 (MQ=255)

        gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc                                      <  1:4568023/50‑1 (MQ=255)

        gggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGc                                      >  1:566779/1‑50 (MQ=255)

         ggCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCt                                     >  1:2096893/1‑50 (MQ=255)

          gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg                                    >  1:2261639/1‑50 (MQ=255)

          gCATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTg                                    <  1:3322017/50‑1 (MQ=255)

           cATAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg                                   <  1:5816629/50‑1 (MQ=255)

            aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTgg                                   >  1:1002138/1‑49 (MQ=255)

            aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc                                  <  1:1923521/50‑1 (MQ=255)

            aTAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc                                  <  1:6231417/50‑1 (MQ=255)

             tAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGc                                  >  1:3667354/1‑49 (MQ=255)

             tAACATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCa                                 <  1:6258646/50‑1 (MQ=255)

              aaCATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCaa                                >  1:2074492/1‑50 (MQ=255)

                cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc                              <  1:2873542/50‑1 (MQ=255)

                cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc                              <  1:4337134/50‑1 (MQ=255)

                cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc                              <  1:6222635/50‑1 (MQ=255)

                cATCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAAcc                              >  1:1794862/1‑50 (MQ=255)

                 aTCGGTCATATATTTCCACCAACGATGGCAGACATCAGTGCTGGCAACCg                             <  1:6268138/50‑1 (MQ=255)

                  tCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCg                             >  1:6318310/1‑49 (MQ=255)

                  tCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCg                             >  1:3024296/1‑49 (MQ=255)

                  tCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCg                             >  1:3588002/1‑49 (MQ=255)

                  tCGGTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGc                            <  1:7424620/50‑1 (MQ=255)

                    ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt                          >  1:7280101/1‑50 (MQ=255)

                    ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt                          >  1:4106014/1‑50 (MQ=255)

                    ggTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCAt                          >  1:164092/1‑50 (MQ=255)

                     gTCATATATTTCCACCAACGTTGGCAGACATCAGTGCTGGCCACCGCAtt                         <  1:5984679/50‑1 (MQ=255)

                        atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTcc                       <  1:1316108/49‑1 (MQ=255)

                        atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTcc                       <  1:1997127/49‑1 (MQ=255)

                        atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTc                        >  1:2867656/1‑48 (MQ=255)

                        atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCa                      <  1:1505892/50‑1 (MQ=255)

                        atatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCa                      <  1:5234838/50‑1 (MQ=255)

                         tatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg                     <  1:6786133/50‑1 (MQ=255)

                         tatatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAg                     <  1:784186/50‑1 (MQ=255)

                           tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc                    <  1:4505630/49‑1 (MQ=255)

                           tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGc                    <  1:6353582/49‑1 (MQ=255)

                           tatTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCg                   <  1:300568/50‑1 (MQ=255)

                            atTTCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGt                  >  1:6492465/1‑50 (MQ=255)

                             tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt                 <  1:5908939/50‑1 (MQ=255)

                             tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGtt                 <  1:4560457/50‑1 (MQ=255)

                             tttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGt                  <  1:3407137/49‑1 (MQ=255)

                              ttCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc                >  1:6271233/1‑50 (MQ=255)

                               tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttct               >  1:2252120/1‑50 (MQ=255)

                               tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc                <  1:4207385/49‑1 (MQ=255)

                               tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc                <  1:4382458/49‑1 (MQ=255)

                               tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc                <  1:2937697/49‑1 (MQ=255)

                               tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc                <  1:3191805/49‑1 (MQ=255)

                               tCCACCAACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttc                <  1:4493293/49‑1 (MQ=255)

                                ccaccaACGTTGGCAGACATCAGTGCTGGCGACCGCATTCCAGCGttct               <  1:6822973/49‑1 (MQ=39)

                                ccaccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt              >  1:1174218/1‑50 (MQ=255)

                                ccaccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt              >  1:4956525/1‑50 (MQ=255)

                                ccaccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt              >  1:5836728/1‑50 (MQ=255)

                                ccaccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttct               <  1:817360/49‑1 (MQ=255)

                                 caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttcttc             <  1:155991/50‑1 (MQ=255)

                                 caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttcttc             <  1:4198870/50‑1 (MQ=255)

                                 caccaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt              <  1:6381370/49‑1 (MQ=255)

                                  accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt              >  1:2928628/1‑48 (MQ=255)

                                  accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt              >  1:4930111/1‑48 (MQ=255)

                                  accaACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCa            <  1:766712/50‑1 (MQ=255)

                                    caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGttctt              >  1:5907948/1‑46 (MQ=255)

                                    caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGa          <  1:6234615/50‑1 (MQ=255)

                                    caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGa          <  1:5143706/50‑1 (MQ=255)

                                    caACGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGa          <  1:1201390/50‑1 (MQ=255)

                                     aaCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAt         <  1:7404786/50‑1 (MQ=255)

                                      aCGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt        <  1:4741589/50‑1 (MQ=255)

                                       cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCGGCGTTCTTCAGATTc       <  1:1949578/50‑1 (MQ=255)

                                       cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt        >  1:2161183/1‑49 (MQ=255)

                                       cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt        >  1:1765763/1‑49 (MQ=255)

                                       cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGAtt        >  1:5027966/1‑49 (MQ=255)

                                       cGTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc       <  1:2844878/50‑1 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAGCCGCATTCCAGCGTTCTTCAGATTCa      <  1:4621064/50‑1 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc       >  1:1125259/1‑49 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc       >  1:5729767/1‑49 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTc       >  1:4124371/1‑49 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCa      <  1:5988562/50‑1 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCa      <  1:5004646/50‑1 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCa      <  1:7560901/50‑1 (MQ=255)

                                        gTTGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCa      <  1:2149976/50‑1 (MQ=255)

                                          tGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt    >  1:4481728/1‑50 (MQ=255)

                                          tGGCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt    >  1:787105/1‑50 (MQ=255)

                                           ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt    <  1:2441424/49‑1 (MQ=255)

                                           ggCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAt    <  1:2101486/49‑1 (MQ=255)

                                            gCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtct  <  1:2942265/50‑1 (MQ=255)

                                            gCAGACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAAtc   <  1:6367226/49‑1 (MQ=255)

GGGTTAGCGGGCATAACATCGGTCATATATTTCCACCAACGTTGGCAAACATCAGTGCTGGCAACCGCATTCCAGCGTTCTTCAGATTCAATCT  >  NC_000913/4093176‑4093269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`