mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 40 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 36.7% | 191.1 / 210.6 | 177 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 888,014 | 0 | T | G | 34.6% | 153.8 / 20.3 | 78 | noncoding (44/81 nt) | rybB | small regulatory RNA RybB |
| * | NC_000913 | 4,070,462 | 0 | T | C | 34.0% | 121.7 / 105.3 | 100 | intergenic (‑61/+53) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| * | NC_000913 | 941,713 | 0 | T | G | 29.2% | 149.2 / 19.1 | 65 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase subunit A |
| * | NC_000913 | 2,483,268 | 0 | T | A | 29.1% | 188.7 / 32.9 | 79 | L24F (TTA→TTT) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 4,161,142 | 0 | C | A | 29.0% | 243.6 / 38.3 | 93 | Q26K (CAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| * | NC_000913 | 1,684,749 | 0 | A | C | 28.8% | 129.9 / 10.1 | 59 | D164A (GAC→GCC) | tus | DNA replication terminus site‑binding protein |
| * | NC_000913 | 1,556,862 | 0 | A | C | 28.0% | 166.5 / 14.8 | 75 | T80P (ACC→CCC) | osmC | osmotically inducible peroxiredoxin |
| * | NC_000913 | 3,492,834 | 0 | T | G | 27.5% | 242.6 / 34.8 | 102 | G89G (GGT→GGG) | tsgA | putative transporter TsgA |
| * | NC_000913 | 4,112,578 | 0 | T | G | 25.7% | 179.8 / 16.5 | 75 | G88G (GGT→GGG) | yiiR | DUF805 domain‑containing protein YiiR |
| * | NC_000913 | 2,840,640 | 0 | A | G | 25.4% | 137.9 / 11.9 | 59 | I373V (ATT→GTT) | ascF | beta‑glucoside specific PTS enzyme IIBC component |
| * | NC_000913 | 2,349,145 | 0 | A | C | 25.0% | 143.7 / 10.5 | 56 | F110V (TTC→GTC) | inaA | putative lipopolysaccharide kinase InaA |
| * | NC_000913 | 3,862,661 | 0 | T | G | 25.0% | 134.3 / 23.4 | 72 | T315P (ACC→CCC) | glvC | putative PTS enzyme II component GlvC |
| * | NC_000913 | 3,813,272 | 0 | C | T | 24.7% | 185.9 / 18.2 | 85 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase |
| * | NC_000913 | 2,368,569 | 0 | A | C | 24.4% | 106.7 / 12.0 | 45 | L177F (TTA→TTC) | arnA | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| * | NC_000913 | 4,161,148 | 0 | G | A | 24.0% | 238.6 / 30.5 | 104 | E28K (GAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| * | NC_000913 | 121,507 | 0 | A | T | 24.0% | 177.5 / 21.9 | 76 | L15L (CTT→CTA) | aroP | aromatic amino acid:H(+) symporter AroP |
| * | NC_000913 | 4,457,105 | 0 | A | G | 23.7% | 179.3 / 16.8 | 76 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| * | NC_000913 | 2,628,625 | 0 | A | C | 23.6% | 280.1 / 15.3 | 106 | V105G (GTC→GGC) | pdeF | cyclic di‑GMP phosphodiesterase PdeF |
| * | NC_000913 | 1,764,785 | 0 | T | A | 23.3% | 185.7 / 21.5 | 73 | intergenic (‑5/+149) | rydB/ydiH | small regulatory RNA RydB/protein YdiH |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815858 | 82 (0.820) | 14 (0.180) | 14/78 | 3.1 | 18.8% | intergenic (‑90/+5) | pyrE/rph | orotate phosphoribosyltransferase/truncated RNase PH |
| ? | NC_000913 | 3815941 = | 56 (0.710) | coding (609/687 nt) | rph | truncated RNase PH | |||||