BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	765,191	Δ1 bp	coding (685/723 nt)	mngR ←	DNA‑binding transcriptional repressor MngR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	765,189	0	T	.	100.0%	388.7 / NA	80	coding (687/723 nt)	mngR	DNA‑binding transcriptional repressor MngR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (37/43); total (37/43)

GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACC  >  NC_000913/765140‑765234

gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt                                               >  1:1340894/1‑50 (MQ=255)

gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt                                               >  1:1937968/1‑50 (MQ=255)

 ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtt                                              <  1:3455887/50‑1 (MQ=255)

 ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtt                                              <  1:3036714/50‑1 (MQ=255)

 ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtt                                              <  1:4191714/50‑1 (MQ=255)

 ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt                                               >  1:4815011/1‑49 (MQ=255)

     ttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAttat                                            <  1:3867956/48‑3 (MQ=255)

       ttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                        <  1:2406999/49‑1 (MQ=38)

       ttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                        <  1:2584450/49‑1 (MQ=38)

       ttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                        <  1:250716/49‑1 (MQ=38)

        tgtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTc                                       <  1:5462873/49‑1 (MQ=38)

         gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                     >  1:5299502/1‑50 (MQ=39)

         gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                     >  1:4949324/1‑50 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                     <  1:5926764/49‑1 (MQ=38)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                     <  1:1828962/49‑1 (MQ=38)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                     <  1:5377509/49‑1 (MQ=38)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                    <  1:460304/50‑1 (MQ=39)

            cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg                                   <  1:2861050/49‑1 (MQ=38)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa                                <  1:3924896/49‑1 (MQ=38)

               aTCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               >  1:1256425/1‑50 (MQ=39)

                tCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAtt                              <  1:4849013/50‑1 (MQ=39)

                tCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAtt                              <  1:6495479/50‑1 (MQ=39)

                tCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTAt                               <  1:796026/49‑1 (MQ=38)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt                            <  1:3445880‑M1/50‑2 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:330483‑M1/1‑49 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             <  1:1066220‑M1/49‑1 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:2091146‑M1/1‑49 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:2950052‑M1/1‑49 (MQ=255)

                   cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                             >  1:6183718‑M1/1‑48 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:912032‑M1/1‑47 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:6405860‑M1/1‑47 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:2730879‑M1/1‑47 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:1510613‑M1/1‑47 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          <  1:6223875‑M1/50‑4 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:5252402‑M1/1‑47 (MQ=255)

                     atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                         <  1:1904016‑M1/50‑5 (MQ=255)

                     atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                          >  1:592622‑M1/1‑46 (MQ=255)

                      tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                        <  1:5074995‑M1/50‑6 (MQ=255)

                      tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                        <  1:3947521‑M1/50‑6 (MQ=255)

                      tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                        <  1:2046754‑M1/50‑6 (MQ=255)

                      tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                        <  1:1134151‑M1/50‑6 (MQ=255)

                       gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                       >  1:5652836‑M1/1‑44 (MQ=255)

                       gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                       >  1:6695057‑M1/1‑44 (MQ=255)

                       gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                       >  1:175240‑M1/1‑44 (MQ=255)

                        atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                      <  1:5650275‑M1/50‑8 (MQ=255)

                         ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                     <  1:3839726‑M1/50‑9 (MQ=255)

                         ttttCGCTGCGCTATCAGGGTAAA‑TTATAGCCATCGGTATTAtagcaat                      >  1:3328859‑M1/1‑42 (MQ=255)

                          tttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                     >  1:4907718‑M1/1‑41 (MQ=255)

                           ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca                    >  1:3743943‑M1/1‑40 (MQ=255)

                            tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                   <  1:509360‑M1/49‑11 (MQ=255)

                             cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                 >  1:4078497‑M1/1‑38 (MQ=255)

                             cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                 >  1:4789628‑M1/1‑38 (MQ=255)

                             cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                  <  1:4695236‑M1/49‑12 (MQ=255)

                             cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa                  <  1:5346396‑M1/49‑12 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTTATCGGTATTAtagcaatcaaacc                <  1:5473807‑M1/50‑14 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                <  1:1296350‑M1/50‑14 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                >  1:4057311‑M1/1‑37 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                >  1:4758168‑M1/1‑37 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                >  1:2638130‑M1/1‑37 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc                <  1:5206564‑M1/50‑14 (MQ=255)

                               cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg               <  1:6012977‑M1/50‑15 (MQ=255)

                               cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg               <  1:1132797‑M1/50‑15 (MQ=255)

                                 gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg               >  1:4107628‑M1/1‑34 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag            >  1:2504016‑M1/1‑33 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag            <  1:2969481‑M1/50‑18 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccga              <  1:1962245‑M1/48‑16 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           >  1:246336‑M1/1‑32 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           <  1:6069094‑M1/50‑19 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           >  1:3022205‑M1/1‑32 (MQ=255)

                                    cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc           >  1:4310536‑M1/1‑31 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:3746614‑M1/1‑30 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:5231209‑M1/1‑30 (MQ=255)

                                      aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:2867465‑M1/1‑29 (MQ=255)

                                      aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca         >  1:5132604‑M1/1‑29 (MQ=255)

                                          gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat    <  1:5642967‑M1/50‑26 (MQ=255)

                                          gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat    >  1:1549049‑M1/1‑25 (MQ=255)

                                          gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat    <  1:6494675‑M1/50‑26 (MQ=255)

                                          gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat    <  1:1137400‑M1/50‑26 (MQ=255)

                                           ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg   <  1:4882611‑M1/50‑27 (MQ=255)

                                           ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg   <  1:1563106‑M1/50‑27 (MQ=255)

                                            gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  <  1:5714084‑M1/50‑28 (MQ=255)

                                            gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  <  1:2609862‑M1/50‑28 (MQ=255)

                                            gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  <  1:2274294‑M1/50‑28 (MQ=255)

                                            gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  >  1:1534729‑M1/1‑23 (MQ=255)

                                            gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  <  1:6578653‑M1/50‑28 (MQ=255)

                                            gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  >  1:397594‑M1/1‑23 (MQ=255)

                                            gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc  >  1:3471108‑M1/1‑23 (MQ=255)

GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACC  >  NC_000913/765140‑765234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`