| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 95 [0] | [0] 98 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 94 (1.060) | 56/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997819‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGT > 1:5173509/1‑50 GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT > 1:1496/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT > 1:3107766/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT > 1:1695549/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:2295467/50‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:133053/50‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:850478/50‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC > 1:1474827/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC < 1:549937/50‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:138840/1‑50 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:5801326/1‑50 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC < 1:5616844/50‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC < 1:3110382/50‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:1280872/1‑50 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:4895834/1‑50 TTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:5048175/1‑50 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:1922360/1‑49 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG < 1:3364047/49‑1 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:5617839/1‑48 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:1226118/1‑48 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:4187776/1‑48 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAG > 1:4940502/1‑50 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAG > 1:6549896/1‑50 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG > 1:6427704/1‑50 GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT > 1:1997283/1‑50 GCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT > 1:3034196/1‑49 GCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT > 1:5535435/1‑49 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCA < 1:5832501/50‑1 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCA < 1:86801/50‑1 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCA < 1:1331413/50‑1 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA > 1:1841329/1‑50 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA < 1:4495736/50‑1 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA < 1:649835/50‑1 TTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT > 1:1586385/1‑50 TATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATT > 1:6697084/1‑50 ATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 1:2836855/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:268691/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:4451143/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:6304201/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC < 1:3838289/49‑1 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC < 1:3916481/49‑1 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT > 1:602466/1‑50 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT > 1:5241184/1‑50 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT < 1:3523577/50‑1 ATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTT > 1:2397733/1‑50 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT < 1:4708033/50‑1 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT < 1:1811042/50‑1 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTT < 1:3224733/49‑1 TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG < 1:496913/49‑1 TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG < 1:2983617/49‑1 TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG < 1:6589270/49‑1 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT > 1:3509085/1‑50 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT > 1:6216033/1‑50 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC < 1:5032814/50‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC < 1:5883767/50‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC > 1:2949584/1‑50 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC > 1:1829076/1‑50 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT < 1:3775219/49‑1 CGAAGAGATCAGGATGATAACGTTTGCAGCAGGTCAATTCCCTTTTGGT < 1:1475032/49‑1 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:5420975/1‑50 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:1853020/1‑50 AGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCG > 1:4031149/1‑49 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA < 1:1542756/50‑1 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA > 1:3111123/1‑50 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA > 1:1644101/1‑50 TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG < 1:4786619/50‑1 CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:674441/1‑49 CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:1135953/1‑49 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA < 1:3042730/50‑1 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA > 1:2399468/1‑50 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA > 1:2473317/1‑50 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGC < 1:3588918/49‑1 GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCAC < 1:4195076/50‑1 GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCAC < 1:1580913/50‑1 GATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:1288093/1‑50 GATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:3169889/1‑50 GATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA < 1:3230947/50‑1 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:3008594/1‑49 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:520548/1‑49 TGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAT > 1:1467374/1‑49 GATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA > 1:6618068/1‑50 TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA < 1:3292626/50‑1 TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA < 1:2823376/50‑1 TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA > 1:4936166/1‑50 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACt < 1:4590140/50‑2 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACG > 1:4010615/1‑50 CGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC > 1:3387558/1‑50 CGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC < 1:3244644/50‑1 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC < 1:4005378/50‑1 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:5740049/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:5645618/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:6174573/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:3204441/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:4819341/1‑50 TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997819‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |