Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,453,928 Δ15,926 bp gspA–[chiA] 16 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3453928 3469853 15926 67 [0] [0] 67 gspA–[chiA] gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 34539270 (0.000)64 (0.770) 42/92 0.1 100% coding (1/420 nt) gspB putative general secretion pathway protein B
?NC_000913 3469854 = 0 (0.000)intergenic (‑1/+291) chiA/tufA endochitinase/translation elongation factor Tu 1

CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453876‑3453927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG  >  NC_000913/3469854‑3469901
                                                                                                    
CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAAC                                                    <  1:3789412/50‑1
 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA                                                   >  1:4112998/1‑50
  GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT                                                  <  1:5169579/50‑1
    GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA                                                >  1:3475381/1‑50
     TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT                                               <  1:5287456/50‑1
     TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA                                                >  1:2393535/1‑49
       ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA                                             >  1:5784028/1‑50
        CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT                                            >  1:4397442/1‑50
        CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT                                            <  1:2582794/50‑1
        CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT                                            >  1:4451219/1‑50
        CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT                                            >  1:4559550/1‑50
        CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT                                            <  1:889304/50‑1
         CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC                                           >  1:856404/1‑50
         CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC                                           <  1:6694510/50‑1
         CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC                                           >  1:5709916/1‑50
               CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                     >  1:26484/1‑50
                 TTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA                                   >  1:1511688/1‑50
                 TTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA                                   >  1:552114/1‑50
                  TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG                                    <  1:1078414/48‑1
                  TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG                                    <  1:2988847/48‑1
                   CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG                                 >  1:3151748/1‑50
                   CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC                                  <  1:585187/49‑1
                     GCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT                                >  1:5725644/1‑49
                      CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA                               >  1:6567270/1‑49
                      CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA                               <  1:6045533/49‑1
                      CTCACGCGCGGCGATATAGAAGTCAAACATTATAATCCCTTGTGACGTA                               <  1:1659118/49‑1
                        CACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA                             >  1:402205/1‑49
                         ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA                           <  1:4844880/50‑1
                         ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA                             <  1:2225325/48‑1
                         ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA                             <  1:2172389/48‑1
                           GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT                         <  1:1848440/50‑1
                           GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT                         <  1:1590743/50‑1
                            CGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG                        <  1:1181849/50‑1
                               GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA                     <  1:1522923/50‑1
                               GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA                      >  1:5518150/1‑49
                               GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA                      >  1:1492297/1‑49
                                GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA                    <  1:1947634/50‑1
                                GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA                    <  1:2365056/50‑1
                                GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA                    <  1:709722/50‑1
                                 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                   >  1:1449181/1‑50
                                 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                   >  1:4428610/1‑50
                                  GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC                  <  1:5573586/50‑1
                                   ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA                 <  1:664522/50‑1
                                    TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                <  1:486224/50‑1
                                    TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA                 >  1:5093602/1‑49
                                    TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA                 >  1:6614192/1‑49
                                    TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA                 >  1:6645422/1‑49
                                      TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                >  1:5228317/1‑48
                                        GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT            >  1:1953019/1‑50
                                        GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT            <  1:2800246/50‑1
                                        GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT            <  1:2228870/50‑1
                                         AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC           <  1:6111078/50‑1
                                         AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC           >  1:4118419/1‑50
                                         AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC           >  1:2508350/1‑50
                                          ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC          >  1:2502154/1‑50
                                          ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC          <  1:909805/50‑1
                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC       >  1:5647715/1‑50
                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC       >  1:2484238/1‑50
                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC       >  1:6741650/1‑50
                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC       >  1:2391376/1‑50
                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC       >  1:1974408/1‑50
                                             CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA        <  1:4650422/49‑1
                                              AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG      >  1:1230276/1‑50
                                              AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG      <  1:901160/50‑1
                                              AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC       <  1:107356/49‑1
                                               AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG      >  1:4988310/1‑49
                                               AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG      >  1:3664071/1‑49
                                                  ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG  <  1:6509668/50‑1
                                                  ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG  <  1:3372293/50‑1
                                                                                                    
CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453876‑3453927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG  >  NC_000913/3469854‑3469901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.