| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 77 [0] | [0] 79 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 77 (0.890) | 48/96 | 0.0 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618943‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > NC_000913/3625680‑3625726 GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTT < 1:1138573/50‑1 CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTA < 1:4372099/50‑1 GGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC > 1:4901925/1‑50 GGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC > 1:2896786/1‑50 GGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC > 1:1236018/1‑50 GGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC > 1:5270671/1‑50 GGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC < 1:1639141/50‑1 GGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC < 1:1785211/50‑1 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCC < 1:1335807/50‑1 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCC < 1:6489925/50‑1 CGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATT < 1:4257184/50‑1 GGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG < 1:4508878/50‑1 GGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG < 1:518572/50‑1 GGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG < 1:4240169/50‑1 GCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGT < 1:4406775/50‑1 GCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGT < 1:2279473/50‑1 GCACGGGCATTTGCAGTGCTGGCCGAAGGAAGATTGAGTTACGCCATTGT < 1:6742983/50‑1 CACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTC > 1:5558462/1‑50 CACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTC > 1:1465454/1‑50 CACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTC > 1:3986126/1‑50 ACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC < 1:4222882/50‑1 ACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC < 1:2850213/50‑1 ACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC < 1:4180770/50‑1 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC < 1:2545927/50‑1 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 1:3992232/1‑49 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 1:1138793/1‑49 GGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAA < 1:6619854/50‑1 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT < 1:2134031/50‑1 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT > 1:6046958/1‑50 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT > 1:1205940/1‑50 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC < 1:848964/50‑1 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC < 1:11781/50‑1 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG > 1:961969/1‑50 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT > 1:1522536/1‑50 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT < 1:4596902/50‑1 GCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCT < 1:4245703/49‑1 GCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCT < 1:3606769/49‑1 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTC > 1:5967752/1‑50 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCC > 1:1863460/1‑50 TGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTG < 1:2463842/50‑1 TGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTG < 1:4857346/50‑1 TGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT > 1:1441084/1‑49 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA < 1:6030958/50‑1 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA > 1:5351326/1‑50 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA < 1:5341692/50‑1 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGA < 1:4319510/49‑1 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:6109532/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATC < 1:1808979/49‑1 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATC < 1:594463/49‑1 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATC < 1:4995692/49‑1 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT < 1:4886578/48‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG < 1:1308286/49‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG < 1:253134/49‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:5150925/1‑49 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCA < 1:5372533/50‑1 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:4651066/1‑48 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:5948614/1‑48 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG < 1:4509477/50‑1 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA < 1:2089204/50‑1 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA < 1:934324/50‑1 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA < 1:5981581/50‑1 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:3944777/1‑48 GGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAG > 1:2493643/1‑50 GGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAG > 1:462302/1‑50 GAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGC > 1:3630564/1‑50 AAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 1:4840283/1‑50 GATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCA < 1:4494365/50‑1 GATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGC > 1:1985644/1‑49 ATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAA > 1:5107396/1‑50 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAT > 1:5768201/1‑50 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAT > 1:4367914/1‑50 GAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGG > 1:6256883/1‑50 GAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGG > 1:4260638/1‑50 GAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATG < 1:2080641/49‑1 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > 1:4407191/1‑50 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > 1:3685262/1‑50 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGG < 1:5754013/49‑1 GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618943‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > NC_000913/3625680‑3625726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |