| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 133 [0] | [0] 133 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 125 (1.470) | 68/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
Only 100 of 133 total aligned reads displayed.
TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGTC > NC_000913/263466‑263562 | ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATag > 1:3158144‑M1/1‑48 (MQ=255)ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATag > 1:3487667‑M1/1‑48 (MQ=255)ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATag > 1:2524315‑M1/1‑48 (MQ=255)ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATag > 1:5772601‑M1/1‑48 (MQ=255) tCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagt > 1:4419507‑M1/1‑47 (MQ=255) cTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtc > 1:3868815‑M1/1‑46 (MQ=255) cTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagt < 1:405509‑M1/49‑4 (MQ=255) aCCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctg > 1:5536859‑M1/1‑44 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgt < 1:5794170‑M1/50‑8 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctg > 1:1267444‑M1/1‑43 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtct < 1:5706943‑M1/48‑6 (MQ=255) cAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgta > 1:5763742‑M1/1‑42 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 1:3441560‑M1/50‑10 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 1:2116636‑M1/50‑10 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 1:5449793‑M1/50‑10 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 1:346246‑M1/50‑10 (MQ=255) gAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:4067960‑M1/1‑40 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGCTagtctgtat > 1:2046582‑M1/1‑39 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatca < 1:3535110‑M1/50‑12 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:1718980‑M1/1‑39 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag < 1:4921515‑M1/50‑13 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg < 1:1431325‑M1/50‑14 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg < 1:2693917‑M1/50‑14 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:3665116‑M1/1‑37 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:3682405‑M1/1‑37 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:1593090‑M1/1‑37 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:2527536‑M1/1‑37 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg > 1:866004‑M1/1‑33 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg > 1:596791‑M1/1‑33 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgt > 1:3770900‑M1/1‑32 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgt > 1:4662345‑M1/1‑32 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgt > 1:3339464‑M1/1‑32 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg < 1:1914769‑M1/49‑18 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg < 1:18811‑M1/49‑18 (MQ=255) cGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgtt > 1:4110465‑M1/1‑31 (MQ=255) cGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgtt > 1:1105960‑M1/1‑31 (MQ=255) cGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgtt < 1:6042849‑M1/50‑20 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc > 1:890119‑M1/1‑30 (MQ=255) gCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcg < 1:3346020‑M1/50‑22 (MQ=255) gCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcg < 1:2526459‑M1/50‑22 (MQ=255) gCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgctcg > 1:2633111‑M1/1‑29 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg < 1:5031691‑M1/50‑23 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg < 1:6420320‑M1/50‑24 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg < 1:1813059‑M1/50‑24 (MQ=255) cGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt > 1:5574414‑M1/1‑25 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtta < 1:5852034‑M1/50‑27 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt > 1:323779‑M1/1‑24 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt < 1:5439888‑M1/49‑26 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt > 1:2719791‑M1/1‑24 (MQ=255) cTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:3358860‑M1/1‑22 (MQ=255) cTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa < 1:3672249‑M1/50‑29 (MQ=255) cTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa < 1:281939‑M1/50‑29 (MQ=255) ttgggtgATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:6287666‑M1/3‑21 (MQ=255) tAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:1371826‑M1/1‑21 (MQ=255) aGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata > 1:5241693‑M1/1‑20 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat < 1:2903317‑M1/50‑32 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:1049837‑M1/1‑19 (MQ=255) ggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatc < 1:6476257‑M1/50‑33 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatca < 1:4275115‑M1/50‑34 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:4581093‑M1/1‑17 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag > 1:6536126‑M1/1‑16 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag < 1:5980843‑M1/50‑35 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag < 1:3906223‑M1/50‑35 (MQ=255) gATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag > 1:5911955‑M1/1‑15 (MQ=255) gATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag > 1:5713033‑M1/1‑15 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagca < 1:4097254‑M1/50‑37 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagc < 1:1082301‑M1/49‑36 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagc < 1:5856202‑M1/49‑36 (MQ=255) tACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa < 1:6562829‑M1/50‑38 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:2720357‑M1/1‑12 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa < 1:2793427‑M1/49‑39 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaa < 1:1746392‑M1/50‑41 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:6363684‑M1/1‑10 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:2789503‑M1/1‑10 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag < 1:2359577‑M1/50‑42 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag < 1:4888228‑M1/50‑42 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag > 1:6345079‑M1/1‑9 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag > 1:4341259‑M1/1‑9 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag > 1:6619685‑M1/1‑9 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag < 1:678782‑M1/50‑42 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag > 1:1714932‑M1/1‑9 (MQ=255) gCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagc > 1:4428910‑M1/1‑8 (MQ=255) gCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagc < 1:3531077‑M1/50‑43 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc < 1:1006412‑M1/50‑44 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc < 1:5228064‑M1/50‑45 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc > 1:6172967‑M1/1‑6 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc < 1:4215788‑M1/50‑45 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc > 1:2685543‑M1/1‑6 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:1362750‑M1/1‑5 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:2109087‑M1/1‑5 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg < 1:3481508‑M1/50‑46 (MQ=255) gATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgca > 1:4956092‑M1/1‑3 (MQ=255) gATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgca < 1:4819425‑M1/50‑48 (MQ=255) gATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgca < 1:2442077‑M1/50‑48 (MQ=255) gATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgc < 1:2368372‑M1/49‑47 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:155404‑M1/1‑2 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:4126716‑M1/1‑2 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat < 1:2671481‑M1/50‑49 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcatc < 1:4208832‑M1/50‑50 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcatc < 1:407955‑M1/50‑50 (MQ=255) | TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGTC > NC_000913/263466‑263562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |