| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 90 [0] | [0] 88 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 86 (0.990) | 43/96 | 0.1 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756109‑2756208 | aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:5762875‑M1/50‑1 (MQ=255)aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 1:5342871‑M1/1‑50 (MQ=255)aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 1:4759907‑M1/1‑50 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc > 1:1678943‑M1/1‑49 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:285086‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:3863651‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:5329416‑M1/1‑47 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 1:3441088‑M1/1‑46 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt < 1:1647995‑M1/50‑5 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt < 1:4871773‑M1/50‑5 (MQ=255) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga < 1:3929431‑M1/50‑8 (MQ=255) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg > 1:1081368‑M1/1‑43 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaa < 1:4743418‑M1/50‑10 (MQ=255) tctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:3561393‑M1/1‑40 (MQ=255) tctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:3490451‑M1/1‑40 (MQ=255) tctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:3312649‑M1/1‑40 (MQ=255) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa < 1:4051792‑M1/48‑11 (MQ=255) aTTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 1:5130114‑M1/1‑37 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag < 1:215941‑M1/49‑14 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag < 1:5971334‑M1/49‑14 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaaca < 1:5965453‑M1/48‑13 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaaca < 1:894970‑M1/48‑13 (MQ=255) tGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagga > 1:3886204‑M1/1‑35 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat > 1:2877409‑M1/1‑34 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:423275‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:4462481‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:3793458‑M1/49‑17 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:4543365‑M1/49‑20 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtag < 1:3201436‑M1/49‑21 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcg < 1:6424450‑M1/50‑23 (MQ=255) ttGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcga < 1:1926970‑M1/50‑24 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga < 1:6505777‑M1/48‑27 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga < 1:2679099‑M1/48‑27 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatg > 1:3303040‑M1/3‑24 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatg < 1:5984256‑M1/47‑26 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatg < 1:73051‑M1/47‑26 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatg < 1:3008344‑M1/47‑26 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatg < 1:5887098‑M1/47‑26 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatg < 1:5385957‑M1/47‑26 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga > 1:1671097‑M1/2‑23 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga > 1:1129681‑M1/2‑23 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga > 1:1279475‑M1/2‑23 (MQ=255) gctAAACGCAGGGAGAATCCCCCcccttgaaaacaggatgtagcgatgaa < 1:4744709‑M1/49‑28 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa < 1:3490880‑M1/50‑29 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac > 1:299871‑M1/1‑21 (MQ=255) aaaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact > 1:5404473‑M1/1‑20 (MQ=255) aaaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact > 1:4762136‑M1/1‑20 (MQ=255) aaaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact > 1:43860‑M1/1‑20 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt < 1:4857943‑M1/50‑32 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt < 1:635063‑M1/50‑32 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact < 1:716969‑M1/49‑31 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact > 1:6650650‑M1/1‑19 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactta < 1:5634595‑M1/50‑33 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:517071‑M1/50‑35 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac > 1:3802182‑M1/1‑15 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac > 1:5353820‑M1/1‑15 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:76717‑M1/1‑14 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:4163856‑M1/1‑14 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga < 1:3799827‑M1/50‑37 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:2811141‑M1/1‑14 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:6524662‑M1/1‑14 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:318318‑M1/1‑14 (MQ=255) ggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgaca < 1:5812310‑M1/50‑39 (MQ=255) ggAGACTCCCCAcccttgaaaacaggatgtatcgatgaaacttaacgaca < 1:2287891‑M1/50‑39 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag > 1:4960696‑M1/1‑11 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag > 1:4178225‑M1/1‑11 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt < 1:6734970‑M1/50‑41 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagta < 1:5239283‑M1/50‑42 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagta < 1:2708910‑M1/50‑42 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa > 1:3408165‑M1/1‑8 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa > 1:1916888‑M1/1‑8 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac > 1:6369876‑M1/1‑7 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac < 1:4606884‑M1/50‑44 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac < 1:1995085‑M1/50‑44 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac < 1:4185502‑M1/50‑44 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaactacagtaactta < 1:5369540‑M1/50‑47 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactta > 1:4355504‑M1/1‑4 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 1:3871918‑M1/49‑46 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 1:6097710‑M1/49‑46 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 1:1977676‑M1/49‑46 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat < 1:5313082‑M1/50‑48 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat < 1:1036971‑M1/50‑48 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat < 1:316128‑M1/50‑48 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat < 1:1618019‑M1/50‑48 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:1843940‑M1/50‑49 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:1952876‑M1/50‑49 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:1282118‑M1/50‑49 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:789463‑M1/50‑49 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:543254‑M1/50‑49 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc < 1:2982321‑M1/50‑50 (MQ=255) | AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756109‑2756208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |