| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 81 [0] | [0] 80 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 78 (0.880) | 49/98 | 0.0 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
TGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTT > NC_000913/1482208‑1482305 | cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa > 1:6657621‑M2/49‑50 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt < 1:815439‑M2/3‑1 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt < 1:6740497‑M2/3‑1 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt < 1:187600‑M2/3‑1 (MQ=255) atcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:4536243‑M2/46‑49 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:959589‑M2/45‑48 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGc < 1:5082486‑M2/5‑1 (MQ=255) cggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:3542233‑M2/44‑47 (MQ=255) cggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:5021718‑M2/44‑47 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg < 1:1501971‑M2/7‑1 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg < 1:2245672‑M2/7‑1 (MQ=255) gcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaa < 1:2804003‑M2/9‑1 (MQ=255) gcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa > 1:5794418‑M2/42‑49 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa < 1:3425092‑M2/10‑1 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:6580982‑M2/41‑50 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:1976125‑M2/40‑49 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc < 1:1289467‑M2/11‑1 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc > 1:3011230‑M2/39‑49 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACa < 1:1997810‑M2/12‑1 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACa < 1:250861‑M2/12‑1 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAACaa < 1:1599663‑M2/13‑1 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAACaa > 1:754164‑M2/38‑50 (MQ=255) acaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt < 1:2817727‑M2/17‑1 (MQ=255) acaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt < 1:6117918‑M2/17‑1 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg > 1:5403562‑M2/33‑50 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg > 1:6695416‑M2/33‑50 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg > 1:5365749‑M2/33‑50 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt < 1:702784‑M2/19‑1 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt > 1:2929885‑M2/32‑50 (MQ=255) agataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc < 1:1719979‑M2/20‑1 (MQ=255) agataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc < 1:814068‑M2/20‑1 (MQ=255) gattccacgccagaacatcgcagccatacTATGCAGAAACAATGCTGTCg < 1:2817821‑M2/21‑1 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc > 1:4112865‑M2/30‑49 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCg < 1:2715905‑M2/21‑1 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa < 1:5159952‑M2/22‑1 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt < 1:4297058‑M2/23‑1 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt < 1:986857‑M2/23‑1 (MQ=255) accacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg > 1:671601‑M2/27‑50 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATgg < 1:5743848‑M2/25‑1 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATgg < 1:5384695‑M2/25‑1 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATgg < 1:4379097‑M2/25‑1 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc < 1:3616267‑M2/26‑1 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct < 1:6312843‑M2/27‑1 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct < 1:4867835‑M2/27‑1 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct < 1:3924433‑M2/27‑1 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct < 1:2337185‑M2/27‑1 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAAGgct > 1:4588114‑M2/24‑50 (MQ=255) gccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctgc > 1:1013109‑M2/22‑50 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:5480921‑M2/11‑47 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:2086934‑M2/11‑47 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCa < 1:2994506‑M2/39‑1 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa < 1:2480583‑M2/41‑1 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:140434‑M2/10‑50 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:120311‑M2/10‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:2205860‑M2/9‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:194407‑M2/9‑50 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt > 1:2725672‑M2/8‑50 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt < 1:5529390‑M2/43‑1 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt < 1:3962596‑M2/43‑1 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg < 1:4081741‑M2/44‑1 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg > 1:39295‑M2/7‑50 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:3998778‑M2/46‑1 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg > 1:6401293‑M2/5‑50 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg > 1:1064426‑M2/5‑50 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:4775688‑M2/46‑1 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:4462998‑M2/46‑1 (MQ=255) tacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGc < 1:1227227‑M2/47‑1 (MQ=255) tacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGc > 1:4592822‑M2/4‑50 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:2331278‑M2/3‑50 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:1196380‑M2/3‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt < 1:4528628‑M2/49‑1 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt > 1:215311‑M2/2‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt < 1:1709532‑M2/49‑1 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt < 1:4742595‑M2/49‑1 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt < 1:872391‑M2/49‑1 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt > 1:1165071‑M2/2‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt < 1:2693524‑M2/48‑1 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt < 1:5907325‑M2/48‑1 (MQ=255) tATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCttt > 1:1864025/1‑50 (MQ=255) tATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCttt > 1:4644184/1‑50 (MQ=255) | TGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTT > NC_000913/1482208‑1482305 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |