| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 113 [0] | [0] 115 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 111 (1.280) | 65/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 115 total aligned reads displayed.
CAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAA > NC_000913/4549664‑4549761 | tggtatttccggttcgataatgcttgtaccaacagggagggaatacgaga < 1:3540‑M2/2‑1 (MQ=255)tggtatttccggttcgataatgcttgtaccaacagggagggaatacgaga < 1:5879760‑M2/2‑1 (MQ=255) ggtatttccggttcgataatgcttgtaccaacagggagggaatacgaga > 1:5359903‑M2/48‑49 (MQ=255) ggtatttccggttcgataatgcttgtaccaacagggagggaatacgaga > 1:4520695‑M2/48‑49 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa > 1:3576880‑M2/47‑50 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa < 1:5664515‑M2/4‑1 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa > 1:1649308‑M2/47‑50 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaa < 1:5657068‑M2/3‑1 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaa < 1:5056370‑M2/3‑1 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt < 1:1503269‑M2/5‑1 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:3045133‑M2/46‑50 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:1753077‑M2/46‑50 (MQ=255) atttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:5217970‑M2/45‑49 (MQ=255) tttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATc < 1:5163297‑M2/6‑1 (MQ=255) tccggttcgataatgcttgtaccaacagggagggaatacgaGAAATcac < 1:5227952‑M2/8‑1 (MQ=255) ccggttcgataatgcttgtaccaacagggagggaatacgaGAAATcaca < 1:3908757‑M2/9‑1 (MQ=255) ccggttcgataatgcttgtaccaacagggagggaatacgaGAAATcaca < 1:1169372‑M2/9‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg > 1:3073303‑M2/40‑49 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg > 1:6001236‑M2/40‑49 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:6164829‑M2/39‑50 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa < 1:5635839‑M2/12‑1 (MQ=255) ggttcgataatgcttgtaccaacagcgagggaatacgaGAAATCACAGGa > 1:628756‑M2/39‑50 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:1777318‑M2/38‑49 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGAc < 1:2467074‑M2/13‑1 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGAc < 1:231012‑M2/13‑1 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGAc < 1:5499288‑M2/13‑1 (MQ=255) ttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACa < 1:6371522‑M2/14‑1 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt > 1:1513847‑M2/35‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt > 1:883016‑M2/35‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt > 1:5200505‑M2/35‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt > 1:1899078‑M2/35‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt > 1:5045742‑M2/35‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt < 1:4123103‑M2/15‑1 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt < 1:5458222‑M2/15‑1 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt < 1:5062631‑M2/16‑1 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:5721810‑M2/33‑50 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:4476444‑M2/33‑50 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:5404382‑M2/32‑49 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt < 1:5317829‑M2/19‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTaa > 1:6314768‑M2/30‑50 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTaa > 1:2921943‑M2/30‑50 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 1:6748504‑M2/20‑1 (MQ=255) tgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt < 1:2213735‑M2/22‑1 (MQ=255) gcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg > 1:3972305‑M2/28‑50 (MQ=255) gcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg > 1:4901702‑M2/28‑50 (MQ=255) cttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGc < 1:5583765‑M2/24‑1 (MQ=255) ttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt > 1:5766163‑M2/26‑50 (MQ=255) tgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTg > 1:2829905‑M2/25‑50 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:2339433‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:4572200‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:580468‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:4824242‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:3692682‑M2/24‑50 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:3653808‑M2/24‑50 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:3453238‑M2/24‑50 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg < 1:3676804‑M2/27‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg < 1:457997‑M2/27‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:90138‑M2/23‑49 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:2088115‑M2/23‑49 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:3992749‑M2/23‑49 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGt < 1:3059753‑M2/28‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGt < 1:1226388‑M2/28‑1 (MQ=255) accaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa > 1:2766907‑M2/22‑50 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa < 1:3507988‑M2/29‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa < 1:1992156‑M2/29‑1 (MQ=255) caacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg > 1:3968010‑M2/20‑50 (MQ=255) caacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg < 1:2040402‑M2/31‑1 (MQ=255) aacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg > 1:5988976‑M2/19‑49 (MQ=255) acagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGc > 1:6008248‑M2/18‑49 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:3931804‑M2/16‑49 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:3357008‑M2/16‑49 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:865547‑M2/14‑50 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATAtt < 1:60443‑M2/38‑1 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATAtt < 1:4695439‑M2/38‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:936710‑M2/39‑1 (MQ=255) gggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAc < 1:6293520‑M2/40‑1 (MQ=255) ggaatacgaGAAATCACATGACATTGCTAATGCTGGTACGCAATATTAcc > 1:3811683‑M2/10‑50 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAcc < 1:3395368‑M2/41‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt < 1:2004421‑M2/42‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt > 1:5240531‑M2/9‑50 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt < 1:5815884‑M2/42‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt < 1:5849501‑M2/42‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt < 1:1025606‑M2/42‑1 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:4212976‑M2/43‑1 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg > 1:5758048‑M2/7‑49 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGa < 1:6564066‑M2/44‑1 (MQ=255) tacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg > 1:3621594‑M2/6‑48 (MQ=255) tacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg > 1:3937134‑M2/6‑48 (MQ=255) tacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGaa < 1:3918740‑M2/45‑1 (MQ=255) tacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGaa < 1:1241032‑M2/45‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAg < 1:1013864‑M2/46‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAg < 1:5589164‑M2/46‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc < 1:6140731‑M2/47‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc > 1:3558876‑M2/4‑50 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc > 1:5559143‑M2/3‑49 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt < 1:3471742‑M2/48‑1 (MQ=255) aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa < 1:6384239‑M2/49‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:2644812/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:1012227/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa > 1:477906/1‑49 (MQ=255) | CAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAA > NC_000913/4549664‑4549761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |