BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,651,293	Δ2,422 bp		[yhiS]–yhiS	[yhiS], insH‑11, yhiS

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3651293	3653714	2422	104 [0]	[0] 104	[yhiS]–yhiS	[yhiS],insH‑11,yhiS

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3651292	0 (0.000)	100 (1.180)	54/94	0.0	100%	pseudogene (2/746 nt)	yhiS	putative uncharacterized protein YhiS
*	?	NC_000913	3653715 =	0 (0.000)	100 (1.180)	54/94	0.0	100%	intergenic (+2/‑246)	yhiS/slp	putative uncharacterized protein YhiS/starvation lipoprotein

Only 100 of 104 total aligned reads displayed.

GGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGT  >  NC_000913/3653666‑3653762

ccaatttaaacatcttagcataaaacaaatgatgaataaggaattttata                                                 >  1:5269228‑M2/50‑50 (MQ=255)

 caatttaaacatcttagcataaaacaaatgatgaataaggaattttatat                                                >  1:3173344‑M2/49‑50 (MQ=255)

 caatttaaacatcttagcataaaacaaatgatgaataaggaattttatat                                                >  1:4434136‑M2/49‑50 (MQ=255)

 caatttaaacatcttagcataaaacaaatgatgaataaggaattttatat                                                >  1:4581057‑M2/49‑50 (MQ=255)

 caatttaaacatcttagcataaaacaaatgatgaataaggaattttata                                                 <  1:877231‑M2/1‑1 (MQ=255)

 caatttaaacatcttagcataaaacaaatgatgaataaggaattttata                                                 <  1:786992‑M2/1‑1 (MQ=255)

 caatttaaacatcttagcataaaacaaatgatgaataaggaattttata                                                 <  1:6523798‑M2/1‑1 (MQ=255)

  aatttaaacatcttagcataaaacaaatgatgaataaggaattttatAtt                                               >  1:2037585‑M2/48‑50 (MQ=255)

    tttaaacatcttagcataaaacaaatgatgaataaggaattttatATTGa                                             <  1:5231076‑M2/5‑1 (MQ=255)

    tttaaacatcttagcataaaacaaatgatgaataaggaattttatATTGa                                             <  1:927456‑M2/5‑1 (MQ=255)

     ttaaacatcttagcataaaacaaatgatgaataaggaattttatATTGat                                            >  1:1796155‑M2/45‑50 (MQ=255)

     ttaaacatcttagcataaaacaaatgatgaataaggaattttatATTGat                                            >  1:1922259‑M2/45‑50 (MQ=255)

      taaacatcttagcataaaacaaatgatgaataaggaattttatATTGat                                            >  1:4057622‑M2/44‑49 (MQ=255)

       aaacatcttagcataaaacaaatgatgaataaggaattttatATTGatt                                           <  1:5743369‑M2/7‑1 (MQ=255)

       aaacatcttagcataaaacaaatgatgaataaggaattttatATTGatt                                           <  1:2636798‑M2/7‑1 (MQ=255)

        aacatcttagcataaaacaaatgatgaataaggaattttatATTGattat                                         <  1:989406‑M2/9‑1 (MQ=255)

        aacatcttagcataaaacaaatgatgaataaggaattttatATTGatta                                          <  1:1437748‑M2/8‑1 (MQ=255)

         acatcttagcataaaacaaatgatgaataaggaattttatATTGattatt                                        <  1:5057826‑M2/10‑1 (MQ=255)

         acatcttagcataaaacaaatgatgaataaggaattttatATTGattat                                         >  1:472412‑M2/41‑49 (MQ=255)

          catcttagcataaaacaaatgatgaataaggaattttatATTGAttatta                                       <  1:2042714‑M2/11‑1 (MQ=255)

          catcttagcataaaacaaatgatgaataaggaattttatATTGAttatta                                       <  1:3821949‑M2/11‑1 (MQ=255)

          catcttagcataaaacaaatgatgaataaggaattttatATTGAttatta                                       <  1:2900564‑M2/11‑1 (MQ=255)

           atcttagcataaaacaaatgatgaataaggaattttatATTGATTATTAg                                      >  1:578136‑M2/39‑50 (MQ=255)

           atcttagcataaaacaaatgatgaataaggaattttatATTGATTATTAg                                      <  1:1235750‑M2/12‑1 (MQ=255)

           atcttagcataaaacaaatgatgaataaggaattttatATTGATTATTAg                                      <  1:5197366‑M2/12‑1 (MQ=255)

           atcttagcataaaacaaatgatgaataaggaattttatATTGATTATTAg                                      >  1:5170170‑M2/39‑50 (MQ=255)

           atcttagcataaaacaaatgatgaataaggaattttatATTGATTATTAg                                      <  1:5037446‑M2/12‑1 (MQ=255)

             cttagcataaaacaaatgatgaataaggaattttatATTGATTATTAGCa                                    >  1:5665411‑M2/37‑50 (MQ=255)

               tagcataaaacaaatgatgaataaggaattttatATTGATTATTAGCACt                                  >  1:5075148‑M2/35‑50 (MQ=255)

                agcataaaacaaatgatgaataaggaattttatATTGATTATTAGc                                     <  1:2386603‑M2/13‑1 (MQ=255)

                agcataaaacaaatgatgaataaggaattttatATTGATTATTAGc                                     <  1:4994932‑M2/13‑1 (MQ=255)

                agcataaaacaaatgatgaataaggaattttatATTGATTATTAGCACtt                                 >  1:6045662‑M2/34‑50 (MQ=255)

                 gcataaaacaaatgatgaataaggaattttatATTGATTATTAGCACtt                                 <  1:2860415‑M2/17‑1 (MQ=255)

                  cataaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTta                               >  1:730120‑M2/32‑50 (MQ=255)

                  cataaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTta                               <  1:4360417‑M2/19‑1 (MQ=255)

                  cataaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTta                               <  1:4304729‑M2/19‑1 (MQ=255)

                   ataaaacaaattatgaataaggaattttatATTGATTATTAGCACTTta                               >  1:5057478‑M2/31‑49 (MQ=255)

                   ataaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTta                               >  1:4381606‑M2/31‑49 (MQ=255)

                    taaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTtata                             <  1:5855745‑M2/21‑1 (MQ=255)

                    taaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTtata                             <  1:2033331‑M2/21‑1 (MQ=255)

                    taaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTtata                             <  1:2621305‑M2/21‑1 (MQ=255)

                    taaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTtata                             <  1:675989‑M2/21‑1 (MQ=255)

                     aaaacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATaa                            >  1:6588393‑M2/29‑50 (MQ=255)

                      aaacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATaa                            <  1:3777301‑M2/22‑1 (MQ=255)

                      aaacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAAt                           <  1:1976866‑M2/23‑1 (MQ=255)

                      aaacaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAAt                           <  1:6266084‑M2/23‑1 (MQ=255)

                        acaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCa                         <  1:1409091‑M2/25‑1 (MQ=255)

                        acaaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCa                         <  1:5077500‑M2/25‑1 (MQ=255)

                         caaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCAt                        <  1:4209289‑M2/26‑1 (MQ=255)

                         caaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCAt                        <  1:6103394‑M2/26‑1 (MQ=255)

                          aaatgattaataaggaattttatATTGATTATTAGCACTTTATAATCAtt                       >  1:5293357‑M2/24‑50 (MQ=255)

                          aaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCAtt                       <  1:5989587‑M2/27‑1 (MQ=255)

                          aaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCAtt                       >  1:572201‑M2/24‑50 (MQ=255)

                          aaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCAtt                       >  1:19129‑M2/24‑50 (MQ=255)

                          aaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCAtt                       >  1:4704601‑M2/24‑50 (MQ=255)

                          aaatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCAtt                       >  1:623079‑M2/24‑50 (MQ=255)

                           aatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCATTg                      <  1:1549396‑M2/28‑1 (MQ=255)

                           aatgatgaataaggaattttatATTGATTATTAGCACTTTATAATCATTg                      <  1:6538143‑M2/28‑1 (MQ=255)

                            atgatgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGa                     <  1:1857119‑M2/29‑1 (MQ=255)

                             tgatgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGaa                    >  1:721308‑M2/21‑50 (MQ=255)

                             tgatgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGaa                    <  1:5968754‑M2/30‑1 (MQ=255)

                             tgatgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGaa                    <  1:6295510‑M2/30‑1 (MQ=255)

                             tgatgaataaggaatattatATTGATTATTAGCACTTTATAATCATTGaa                    <  1:1548908‑M2/30‑1 (MQ=255)

                              gatgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGaa                    >  1:5524036‑M2/20‑49 (MQ=255)

                               atgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAAt                   <  1:51495‑M2/31‑1 (MQ=255)

                               atgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAAt                   <  1:1508793‑M2/31‑1 (MQ=255)

                               atgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAAt                   <  1:973520‑M2/31‑1 (MQ=255)

                               atgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAAt                   <  1:3579571‑M2/31‑1 (MQ=255)

                                tgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaa                 <  1:1295968‑M2/33‑1 (MQ=255)

                                tgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaa                 <  1:14970‑M2/33‑1 (MQ=255)

                                tgaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATa                  >  1:6164530‑M2/18‑49 (MQ=255)

                                 gaataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaa                 >  1:3986936‑M2/17‑49 (MQ=255)

                                  aataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaaa               <  1:5369413‑M2/35‑1 (MQ=255)

                                  aataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaaa               <  1:574831‑M2/35‑1 (MQ=255)

                                  aataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaaa               <  1:1668440‑M2/35‑1 (MQ=255)

                                  aataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaa                >  1:110469‑M2/16‑49 (MQ=255)

                                  aataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaa                >  1:221828‑M2/16‑49 (MQ=255)

                                  aataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaa                >  1:4733687‑M2/16‑49 (MQ=255)

                                  aataaggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaa                <  1:4396763‑M2/34‑1 (MQ=255)

                                  aataaggaattttatATGGATTATTAGCACTTTATAATCATTGAATaaaa               <  1:6564442‑M2/35‑1 (MQ=255)

                                    taaggaattttatATTGATTATGAGCACTTTATAATCATTGAATAAAAAt             <  1:6466395‑M2/37‑1 (MQ=255)

                                      aggaattttatATTGATTATTAGCACTTTATAATCATTGAATaaaaa              >  1:3687702‑M2/12‑47 (MQ=255)

                                      aggaattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATa            <  1:5137664‑M2/38‑1 (MQ=255)

                                      aggaattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATa            <  1:1067880‑M2/38‑1 (MQ=255)

                                        gaattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAt         >  1:533662‑M2/10‑50 (MQ=255)

                                        gaattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAt         <  1:4873136‑M2/41‑1 (MQ=255)

                                         aattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAtt        <  1:1417668‑M2/42‑1 (MQ=255)

                                         aattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAtt        >  1:2510626‑M2/9‑50 (MQ=255)

                                         aattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAtt        <  1:2545333‑M2/42‑1 (MQ=255)

                                         aattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAtt        <  1:3796646‑M2/42‑1 (MQ=255)

                                         aattttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAtt        <  1:4181462‑M2/42‑1 (MQ=255)

                                           ttttatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGAtttt      <  1:2854240‑M2/44‑1 (MQ=255)

                                              tatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTAt    <  1:1691509‑M2/46‑1 (MQ=255)

                                              tatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTAt    <  1:5827650‑M2/46‑1 (MQ=255)

                                              tatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATg   >  1:6423603‑M2/4‑50 (MQ=255)

                                              tatATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATg   >  1:5133422‑M2/4‑50 (MQ=255)

                                               atATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATg   <  1:4600596‑M2/47‑1 (MQ=255)

                                               atATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATg   >  1:2428791‑M2/3‑49 (MQ=255)

                                                tATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGt  <  1:5852383‑M2/48‑1 (MQ=255)

                                                tATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGt  <  1:3185907‑M2/48‑1 (MQ=255)

GGTAAAAGAATTCGCTTATCAAATCATTACCAGAATATAATACCATAATATTGATTATTAGCACTTTATAATCATTGAATAAAAATAGATTTTATGT  >  NC_000913/3653666‑3653762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`