| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,342,922 | C→T | R89C (CGT→TGT) | yciH → | putative translation factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,342,922 | 0 | C | T | 90.8% | 206.8 / 10.5 | 65 | R89C (CGT→TGT) | yciH | putative translation factor |
| Reads supporting (aligned to +/- strand): ref base C (4/2); new base T (30/29); total (34/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.79e-01 | |||||||||||
CTGCGGCGGAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGCGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATGAAGGTAA > NC_000913/1342873‑1342967 | ctgcggcGGAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGc > 1:5778966/1‑50 (MQ=255) gcggcgGAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAgtgt > 1:2218749/1‑50 (MQ=255) cggcggAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAgtgt > 1:1776530/1‑49 (MQ=255) ggcggAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGa < 1:2651714/50‑1 (MQ=255) cggAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGAtt < 1:5696612/50‑1 (MQ=255) ggAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGAttt < 1:2706157/50‑1 (MQ=255) ggAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGAttt < 1:5030356/50‑1 (MQ=255) ggAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGAtt > 1:5653620/1‑49 (MQ=255) ggAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGAtt > 1:1931879/1‑49 (MQ=255) ggAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGCGTGAtt > 1:5385503/1‑49 (MQ=255) gAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATtta < 1:4282545/50‑1 (MQ=255) gAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATtta > 1:1530054/1‑50 (MQ=255) gAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATtta < 1:4531881/50‑1 (MQ=255) gAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATtta > 1:3752579/1‑50 (MQ=255) aGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATttat < 1:1249224/50‑1 (MQ=255) aGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATttat < 1:3814590/50‑1 (MQ=255) aGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATttat > 1:2343643/1‑50 (MQ=255) aGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGCGTGATttat > 1:757046/1‑50 (MQ=255) gCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATttatt < 1:5760798/50‑1 (MQ=255) gCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATttatt < 1:3801822/50‑1 (MQ=255) cAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATttatta < 1:630484/50‑1 (MQ=255) aGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATttatta > 1:674632/1‑49 (MQ=255) gTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATTTATTaa > 1:4819087/1‑49 (MQ=255) ttAAAGATGAAGTTATTGAAATCCAGGGCGATAAGTGTGATTTATTaaaa < 1:511174/50‑1 (MQ=255) aaaGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATTTATTAAAAt < 1:4440983/49‑1 (MQ=255) aaGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCa > 1:4431857/1‑50 (MQ=255) aGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCac > 1:1975354/1‑50 (MQ=255) aGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCac > 1:1620733/1‑50 (MQ=255) aGATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCac > 1:2873505/1‑50 (MQ=255) aGATGGAGTTATTGAAATCCAGGGCGATAAGCGTGATTTATTAAAATCac < 1:2508939/50‑1 (MQ=255) gATGGAGTTATTGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCac > 1:940026/1‑49 (MQ=255) aTGGAGTTATTGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCacta < 1:1356500/50‑1 (MQ=255) aTGGAGTTATTGAAATCCAGGGCGATAAGCGTGATTTATTAAAATCacta > 1:1276515/1‑50 (MQ=255) tGGAGTTATTGAAATCCAGGGCGATAAGCGTGATTTATTAAAATCactac < 1:234630/50‑1 (MQ=255) aGTTATTGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTg < 1:3558921/50‑1 (MQ=255) gTTATTGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGa < 1:315044/50‑1 (MQ=255) ttATTGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTg > 1:3229723/1‑48 (MQ=255) aTTGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAg < 1:897001/49‑1 (MQ=255) aTTGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAg < 1:5714481/49‑1 (MQ=255) aTTGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGc > 1:2760339/1‑50 (MQ=255) ttGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGc < 1:1241787/49‑1 (MQ=255) ttGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGc > 1:197731/1‑49 (MQ=255) ttGAAATCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGc < 1:3328140/49‑1 (MQ=255) gAAATCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGa < 1:5575799/49‑1 (MQ=255) gAAATCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGa > 1:132587/1‑49 (MQ=255) aaaTCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGaa < 1:6712033/49‑1 (MQ=255) aTCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAgg > 1:4674549/1‑50 (MQ=255) tCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAgg > 1:6301530/1‑49 (MQ=255) tCCAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAgg > 1:2254767/1‑49 (MQ=255) ccAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGa > 1:3045014/1‑50 (MQ=255) cAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGAt > 1:3719444/1‑50 (MQ=255) cAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGAt < 1:2767042/50‑1 (MQ=255) cAGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGAt > 1:5308982/1‑50 (MQ=255) cAGGGCGATAAGCGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGAt > 1:5814000/1‑50 (MQ=255) aGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGAt > 1:5409451/1‑49 (MQ=255) aGGGCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGAt > 1:1267134/1‑49 (MQ=255) gggCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATg > 1:5502097/1‑49 (MQ=255) ggCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATGaa < 1:1621076/50‑1 (MQ=255) gCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATGAAg > 1:563896/1‑50 (MQ=255) gCGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATGAAg < 1:1885112/50‑1 (MQ=255) cGATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATGAAgg > 1:124841/1‑50 (MQ=255) gATAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATGAAGGt < 1:693411/50‑1 (MQ=255) aTAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATGAAGGt > 1:5686744/1‑49 (MQ=255) aTAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATGAAGGTa < 1:909027/50‑1 (MQ=255) aTAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATGAAGGTa < 1:1702667/50‑1 (MQ=255) tAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATGAAGGTaa < 1:1995142/50‑1 (MQ=255) tAAGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATGAAGGTa > 1:5680462/1‑49 (MQ=255) aaGTGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATGAAGGTaa > 1:1219839/1‑49 (MQ=255) | CTGCGGCGGAGCAGTTAAAGATGGAGTTATTGAAATCCAGGGCGATAAGCGTGATTTATTAAAATCACTACTTGAAGCGAAAGGGATGAAGGTAA > NC_000913/1342873‑1342967 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |